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EST details — SGN-C10947

Search information 
Request: 10947Match: SGN-C10947
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C10947Clone name: cLEC-6-L2
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172786 is on microarray TOM1: SGN-S1-1-1.3.20.10
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T195236 EST: SGN-E393910 Direction: 3' Facility: INRA
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T195678 EST: SGN-E394352 Direction: 3' Facility: INRA
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T195678 EST: SGN-E399063 Direction: 3' Facility: INRA
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T195679 EST: SGN-E394353 Direction: 5' Facility: INRA
Clone: SGN-C172786 [TUS-14-G24] Trace: SGN-T200214 EST: SGN-E399064 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E202388Length: 534 bp (777 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202388 [] (trimmed) TTTTGCCTCTTACGAAAAACTTCACTTCAGAATATCTTCTCTAATTCCTAAGAATTTTTCAGATCTCCTTTCAATACTTTTACTTTTTTTTATTA
TATAAATCGTCAGTTCATCGGCTTTTTTGCTTTTTTCACTTTTTTTTTTCATCACATCTCGAAACTTTGCATCTTTTTTTGTCTACTGTAAATGA
TGGCCGTACTTCCTGGAGAAAATCCGATCGCCGTACTTCCGGTGGATAAACAGATGGGTATACCGCCGTTGAATACTCTGCCGGTGGGATACCGT
TTCCGGCCGACAGATGAGGAGTTGGTGAATCATTATCTGAGGTTGAAGATCAACGGTGCTGATAGTCAGGTCAGCGTTATTCGAGAAGTTGATAT
CTGTAAACTCGAGCCTTGGGACTTACCTGATTTGTCTGTGGTAGAGTCGCACGACAACGAGTGGTTCTTCTTCTGCCCAAAGGATCGTAAGTATC
AAAATGGGCAGCGACTGAACCGAGCAACAGAACGAGGCTACTGGAAAGCCACTGGTAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202388] SGN-U569518 Tomato 200607 Build 2 25 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T24049 [Download][View] Facility Assigned ID: TCAAX61TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.978 Expected Error Rate: 0.0049 Quality Trim Threshold: 14.5