EST details — SGN-C172650

Search information 
Request: 172650Match: SGN-C172650
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C172650Clone name: TUS-14-B8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C172650 is on microarray TOM1 spot ID 1-1-1.2.20.1 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C10749 [cLEC-6-C3] Trace: SGN-T23899 EST: SGN-E202238 Direction: 5' Facility: TIGR
Clone: SGN-C172650 [TUS-14-B8] Trace: SGN-T187988 EST: SGN-E374680 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E374681Length: 571 bp (904 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E374681 [] (trimmed) ATGTCAAGTCACAAAACTATAAATCTGGAGAGCAAAGTTTCACAACAGTCAGACAGACAGCTCACAAACAGGGATTACAGCTTCAAAAACAAGGC
GAGAATGTCTCCCCACTATAAAAATCACAACTTGAAAATTACACGGGCCTCTTCTTATTTGAACTCCAAATATAAGAAAATTTTAGCCTGTTTGC
TTTACCAAAAACCAGGCCATTCAAGAGTAAGACGCCAAACAACAAAAACATTTTGAGAAAGATAATATTATTTGCCTGCTCCACAAGCATTTGAA
TAGGGGATGTTCTAATTGACAACATCAAGGACCAGCTTACGTGACTTGAGAACAGACCACCTCAAACGCCTGTAGTAAGCAGCTTGAAGCAGTGC
AAGGGACAGTACAAATATCCACTTGAAGCCCATCAGTTTTCTCTCTTCCATTTCTGGTTCAGCAGCCCAAGTTAAAAATGACACCACATCTTTCC
CCATCTGAGCTTCTGTTGCAGGGACACCATCTTCATACTCAACAGCACCATCATTAAGCATTTTTGGCATTGCAATAGCTCCACCAGGGAAGTAA
G
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E374681] SGN-U577864 Tomato 200607 Build 2 91 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T187989 [Download][View] Facility Assigned ID: FA0AAD2DA04RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.951 Expected Error Rate: 0.0060 Quality Trim Threshold: 14.5