EST details — SGN-C172862
| Search information |
| Request: 172862 | Match: SGN-C172862 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C172862 | Clone name: TUS-14-K4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172862 is on microarray TOM1 spot ID 1-1-5.3.20.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14164 [cLEC-7-B13] | Trace: SGN-T25442 | EST: SGN-E202160 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172862 [TUS-14-K4] | Trace: SGN-T195245 | EST: SGN-E393919 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172862 [TUS-14-K4] | Trace: SGN-T195393 | EST: SGN-E394067 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172862 [TUS-14-K4] | Trace: SGN-T195393 | EST: SGN-E399073 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172862 [TUS-14-K4] | Trace: SGN-T200217 | EST: SGN-E399074 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E394360 | Length: 659 bp (832 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E394360 [] (trimmed)
ATCTCCTAAACTCTCCACTCAAAAAACAAACCAAACATACCAAAAAAATCAAAGAAAAAAGAGAAAGCATTGTAAACAAAATGAATGAAATGGTA
CTAAACAATATCAATTCAATTCTTGAAGCTTTACAAGCTAACCCTATACTAATCTTCTTCTTCATCATCCCTCTCTTCTTCTTATACCTTTTTTC
GATGTCCCGCCGTAAACGTTATCCTCCAGGACCATTAGGCTGGCCTCTCATTGGTAACATGATGATAATGGACCAGTTAACTCACCGTGGTCTTG
CCAAACTTGCACAAAAATATGGTGGCGTTTTTCACCTCAAAATGGGTTATGTCCACAAAATTGTTATATCTGGTCCAGAAGAAGCTCGTCAAGTA
CTGCAGGTACAAGACAACATATATTCGAATCGTCCAAAGACCGTAGCGATAAGTTACCTAACGTACGATCGTGCGGACATGGCTTTTGCTGACTA
CGGACCGTTTTGGCGTCAGATGAGAAAATTATGTGTTATGAAATTATTCAGTCGTAAACGAGCTGAGTCATGGGACTCGGTTCGCGACGAAGTAG
ACTCGATGGTAAAGATAGTTACAACCAACACGGGCACATCAATTAACTTAGGGGAACTTGTTTTCTGTCTCACTCGTAACATTATCTAT
CTAAACAATATCAATTCAATTCTTGAAGCTTTACAAGCTAACCCTATACTAATCTTCTTCTTCATCATCCCTCTCTTCTTCTTATACCTTTTTTC
GATGTCCCGCCGTAAACGTTATCCTCCAGGACCATTAGGCTGGCCTCTCATTGGTAACATGATGATAATGGACCAGTTAACTCACCGTGGTCTTG
CCAAACTTGCACAAAAATATGGTGGCGTTTTTCACCTCAAAATGGGTTATGTCCACAAAATTGTTATATCTGGTCCAGAAGAAGCTCGTCAAGTA
CTGCAGGTACAAGACAACATATATTCGAATCGTCCAAAGACCGTAGCGATAAGTTACCTAACGTACGATCGTGCGGACATGGCTTTTGCTGACTA
CGGACCGTTTTGGCGTCAGATGAGAAAATTATGTGTTATGAAATTATTCAGTCGTAAACGAGCTGAGTCATGGGACTCGGTTCGCGACGAAGTAG
ACTCGATGGTAAAGATAGTTACAACCAACACGGGCACATCAATTAACTTAGGGGAACTTGTTTTCTGTCTCACTCGTAACATTATCTAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E394360] | SGN-U571791 | Tomato 200607 | Build 2 | 34 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195686 [Download][View] | Facility Assigned ID: FA0AAD2BF02RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.972 | Expected Error Rate: 0.0040 | Quality Trim Threshold: 14.5 |
Working
