EST details — SGN-C172869
| Search information |
| Request: 172869 | Match: SGN-C172869 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C172869 | Clone name: TUS-14-K11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C172869 is on microarray TOM1 spot ID 1-1-6.3.20.7 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C14183 [cLEC-7-C13] | Trace: SGN-T25203 | EST: SGN-E201921 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C172869 [TUS-14-K11] | Trace: SGN-T195134 | EST: SGN-E393808 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172869 [TUS-14-K11] | Trace: SGN-T195592 | EST: SGN-E394266 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172869 [TUS-14-K11] | Trace: SGN-T195592 | EST: SGN-E399526 | Direction: 5' | Facility: INRA |
| Clone: SGN-C172869 [TUS-14-K11] | Trace: SGN-T199612 | EST: SGN-E398286 | Direction: 3' | Facility: INRA |
| Clone: SGN-C172869 [TUS-14-K11] | Trace: SGN-T199612 | EST: SGN-E398963 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393991 | Length: 663 bp (850 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393991 [] (trimmed)
CAGCCTCGCTCCAAGGATCACCAGTCCGGTTGCTGTAGCTGCTGCTATGGTCGCAAAAAGAAGCATGTTAATACATCAGAAGAACATCGGGCCTT
GCGACGAGGTGATTCAGACGATGAAGAAATGAATCTCTCACTGGCTCCCAAGGCTTTTGGGAACTCAGCAGTTCTTATTGATTCAATTCCTGTGG
CGGAGTTCCAAGGTCGTCCTTTGGCAGATCACCCAGCTGTGAAGAATGGACGGCCTCCTGGTGCTTTGACCATTCCTCGAGAGCATCTTGATGCA
TCAACAGTTGCAGAGGCCATCAGTGTCATCTCCTGCTGGTATGAGGAGAAGACAGAGTGGGGACAACGTGTCGGATGGATTTATGGTTCAGTTAC
TGAAGATGTTGTGACAGGATACAGGATGCACAACAGAGGTTGGAAGTCAGTTTATTGTGTTACCAAACGTGATGCATTCCGTGGGACTGCCCCTA
TTAATCTCACTGATAGGCTTCATCAGGTCCTTCGATGGGCTACTGGTTCAGTTGAGATCTTCTTCTCCCGGAACAATGCCCTTCTTTCCAGTTCA
AAAATGAAATTCTTACAGAAAATTGCTTACCTCAATTGTGGAATCTATCCCTTCACATCAATCTTCTTAATCGTCTACTGTTTCCTTCCAGCA
GCGACGAGGTGATTCAGACGATGAAGAAATGAATCTCTCACTGGCTCCCAAGGCTTTTGGGAACTCAGCAGTTCTTATTGATTCAATTCCTGTGG
CGGAGTTCCAAGGTCGTCCTTTGGCAGATCACCCAGCTGTGAAGAATGGACGGCCTCCTGGTGCTTTGACCATTCCTCGAGAGCATCTTGATGCA
TCAACAGTTGCAGAGGCCATCAGTGTCATCTCCTGCTGGTATGAGGAGAAGACAGAGTGGGGACAACGTGTCGGATGGATTTATGGTTCAGTTAC
TGAAGATGTTGTGACAGGATACAGGATGCACAACAGAGGTTGGAAGTCAGTTTATTGTGTTACCAAACGTGATGCATTCCGTGGGACTGCCCCTA
TTAATCTCACTGATAGGCTTCATCAGGTCCTTCGATGGGCTACTGGTTCAGTTGAGATCTTCTTCTCCCGGAACAATGCCCTTCTTTCCAGTTCA
AAAATGAAATTCTTACAGAAAATTGCTTACCTCAATTGTGGAATCTATCCCTTCACATCAATCTTCTTAATCGTCTACTGTTTCCTTCCAGCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393991] | SGN-U567218 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195317 [Download][View] | Facility Assigned ID: FA0AAD2AF06RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.983 | Expected Error Rate: 0.0057 | Quality Trim Threshold: 14.5 |
Working
