EST details — SGN-C173572

Search information 
Request: 173572Match: SGN-C173572
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C173572Clone name: TUS-16-H18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C173572 is on microarray TOM1 spot ID 1-1-7.4.18.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C3477 [cLEC-20-L20] Trace: SGN-T27694 EST: SGN-E205912 Direction: 5' Facility: TIGR
Clone: SGN-C173572 [TUS-16-H18] Trace: SGN-T196935 EST: SGN-E395609 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E398478Length: 688 bp (862 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398478 [] (trimmed) TTTTTTTTCTCCACAAGGAAAAAGAAGCTAATAGATGCTTAAGTGAAACATAAGTTCTCTTTATTTTTCTATAAACTTAAAATACCATTTGTGGC
TACCAGTTAGTACATTAGAAAGAAGCATAACTGGTATTAAACAGAAAGAAAAAGAACCTAAAACATGAATGACATGAAGGTAGTTCAAGCGTTCG
ATCGGAGTGAATTATAGAGATAGATCAGCCAAGTCAAATGATCTTGAAACAGCTCTACACCAAGAATCCGCCTTCTTTTTCCTCAATTCTTCTTC
TAACACAGGTTTGAATATAGTTGCTTGCTTCAGCTTTTCCCCAGAAGCAAATATGTCATTCTCTGTGTAGACTCCAACAGCTAATCCAGCAGCAT
AAGCTGCCCCAAGAGCTGTTGTTTCTATATCAGCTGGTCTTACAACTGAACTACCCAACAAGTCAGCCTGAATTTGCATCAAAAGGTTGTTGATT
GTAGCACCACCATCCACACGGAGTAAGAATTCTGTTTTGTCACTCTTAGCTTCATCTTTCGTTCCAGCATCCTTGTGCATGGAATCAAGCACGTC
TTTTACCTGGAAACACATGCTTTCAAGTACTGCCCTAGCAATGTGAGACTTGTTGGTGAATCTAGTTATACCAATACAAACCCCGCGAGCATCAT
CACGCTACCACCGAACAAACAAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398478] SGN-U584249 Tomato 200607 Build 2 20 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T199804 [Download][View] Facility Assigned ID: FA0AAD4DD09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.969 Expected Error Rate: 0.0047 Quality Trim Threshold: 14.5