EST details — SGN-C174228

Search information 
Request: 174228Match: SGN-C174228
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C174228Clone name: TUS-18-D2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174228 is on microarray TOM1 spot ID 1-1-7.4.16.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7371 [cLEC-38-L14] Trace: SGN-T31606 EST: SGN-E209071 Direction: 5' Facility: TIGR
Clone: SGN-C174228 [TUS-18-D2] Trace: SGN-T197309 EST: SGN-E395983 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E395984Length: 637 bp (902 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E395984 [] (trimmed) CAGGATCAATGCAGAAATCCAGGTCGCAGAGGTGTCGGGGTTCACAACAATGGGAGAACTGCTACAAACAACAGAAAGGCAACTCGAGGAAACAA
ATGCTGATGGTCTCACTTTGACTGACCTTATCCATTTGGAAAACGAACTTCAAACTGCTCTAATACATCTCAGAGCTAGAAAGACACATTTGATG
CTTGAATCTGCTAAGGTTCTTCATGAGAAGGAAAAACTGCTGCTAGAGGAAAAGAAACATCTGGAGGACAATATAGCTAGTATCAAGAAAAACAC
AAAAGTGAATGAAATGTCTGACCTTCCAGCACCCCACATGATTTGTGGACAACAAAAAGTTACCCTGAATTTCTTCTAGTGATTATCGTCGTATT
CGTCGAAAAGCCTTGCTTCTGCACCAGAGGAACCTGCAAAATTAGTTTCAATAAAACTAATAATTATTCATCCTTGTTCTTGTTTCTAATGGATG
ATGATTAAAGTTAACTTCTCTACTTTGACATATTTACTAGAGGGTGACTTATATGCCTATTTTTCCCTCTTTTTAAGTTGTATAATGGAGTACTT
GAAATTGATTACCCTACACATTATTGTTATGATTTTTTTGTGAAGAGTAATATTGCAAAATTACGTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E395984] SGN-U578955 Tomato 200607 Build 2 30 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T197310 [Download][View] Facility Assigned ID: FA0AAD6DB01RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.950 Expected Error Rate: 0.0044 Quality Trim Threshold: 14.5