EST details — SGN-C174974

Search information 
Request: 174974Match: SGN-C174974
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C174974Clone name: TUS-20-C4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C174974 is on microarray TOM1 spot ID 1-1-5.3.14.19 [Order] [Tomato Microarray Database]
See unigene SGN-U581008 for alternative clones/ESTs which are mapped
Additional sequencing 
Clone: SGN-C23810 [cLED-6-G22] Trace: SGN-T49952 EST: SGN-E232966 Direction: 5' Facility: TIGR
Clone: SGN-C174974 [TUS-20-C4] Trace: SGN-T189890 EST: SGN-E377679 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E377680Length: 632 bp (919 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377680 [] (trimmed) CAGGTAAGCTAAGAGAGAGAAAATGGTGTTGATTGATAAACTTTGGGATGATGTTATGGCTGGTCCCAGCCCTGATAAAGGACTCGGCAAACTCA
GAAAGAGCCTCACTATTCAAACTGGTGGTGAATCAGGAGAAGGATCTAGCAAGTACCAGAGATCTCTGTCGATGCCGGCAAGTCCGCCGACGCCA
GGTACGCCGGTGACGCCGACGAATATATCGCCGACGGTACGGAAAGAGAATGTGTGGAGGAGTGTTTTTCACCCAGGGAGCAATTTAGCTACCAG
GAGAATTGGTGCTGAAGTGTTTGATAAGCCTTCTCACCCTAACGCTCCTACTGTTTATGACTGGCTCTACAGTGGGAACACCAGATCTAAGCATC
ATGAGAAGTGCTGAGAGTTTTTGGGTGGAAAAAAGCAGTAGAAAATCTTCATGTAAATAGTGTTTTTTTTCCTATGCGAGTTGGGGACTTGCTAT
CTATATTTGTGATTATATGTTTTTTCTGTTGGGTATTAAGTTATAATTAAGTAGTATGCTGTATTGTAAATTACGCTTTCAAAAGCTAATTTCTT
AGCTTTAATGGCAGGCCATCTATGGCTTTCTAGTTCCAAATGAAGTTGTTACTATTATTACT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377680] SGN-U581008 Tomato 200607 Build 2 103 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189891 [Download][View] Facility Assigned ID: FA0AAD8BB02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0066 Quality Trim Threshold: 12.5