EST details — SGN-C175101

Search information 
Request: 175101Match: SGN-C175101
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C175101Clone name: TUS-20-H11
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175101 is on microarray TOM1 spot ID 1-1-6.4.13.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C23952 [cLED-6-M22] Trace: SGN-T50150 EST: SGN-E233164 Direction: 5' Facility: TIGR
Clone: SGN-C175101 [TUS-20-H11] Trace: SGN-T189977 EST: SGN-E377478 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E377479Length: 661 bp (881 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E377479 [] (trimmed) AAAAAAAACCCATATAAACTCTTTTATTTTTCTCTCATACAGAGTCTTCTCTTTTCTCTTTCTTAGTTTCTTCTTCTCTGCTTCTTCCTATTTAT
TTTAATAGACTGATTGATTGGTTAATGATGAAAAACAAGTCCCTATTTTAATTTGTTGTCTTTTATTTGTATTTTTTTCTCTATTGCTATTGAGT
TAACCCCTTTTATTCATATCCACATCTTTTAATTTTCTTGTATTATTTTGCTATTCTAAAACATCACTATACAAATATTTGGTGTTTTTGTATAA
TTCCTTTCAACAATTTCAATTTTCACATTACAAATTCTCCAGTCCTGTCAATTCTGTTTTTTGTCAAACCAAAGAATTAAGGAGATAAACTAATC
TTATCATCATGAAGAGGTTCAGTTTCTCAGATTCTTCTGGCAAATTGCTTTATCCAACTGAAGAGAAAAATACAGAGAATTTGGGATATAGCAAT
GAATTTCAGGCAATGTTGGATGGATTGGAAGATGAAGATGGGATAGAAGAAAGTGGATGTGGAACAGGGAAGAAAAGGAGGTTAAGAGTAGATCA
AGTTCAAGCACTGGAGAAAATTTTCGAGGTTGATAATAAACTTGATCCTGATAGAAAAGTTAAAATTGCACAAGAATTAGGCCTGCAACCA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E377479] SGN-U579283 Tomato 200607 Build 2 53 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T189978 [Download][View] Facility Assigned ID: FA0AAD8CD06RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.922 Expected Error Rate: 0.0037 Quality Trim Threshold: 14.5