EST details — SGN-C175455
| Search information |
| Request: 175455 | Match: SGN-C175455 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C175455 | Clone name: TUS-21-G5 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175455 is on microarray TOM1 spot ID 1-1-4.3.13.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C15296 [cLED-11-I17] | Trace: SGN-T51288 | EST: SGN-E235278 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175455 [TUS-21-G5] | Trace: SGN-T190268 | EST: SGN-E377077 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378514 | Length: 561 bp (1277 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E378514 [] (trimmed)
TCCTTATGCTCCACAGAAACATCCTATGTACGGACAAGCTCCCGGATTCTATCCTAGACCTGGTCAACACTCCGGCGGCCGGAACCCTCCTTTCC
ATCACACGCCTCCTCCGTCTTCAAACACTGGAATCGGCATCAGAGTTGCTATTAAACCCGAATATCGGATTACACCTCCGCCTCAATTGTCAACA
CAAGTGGGAGAAATTCCCCGAAGCACATTCAACTTTGATTTTGACCTTGAGAAAAAGATTTTGGCTGAAGCAGAAAAGGAAAGCCAGAACTGGAG
CAAGCTAGGGCTGGAAAATCTTCCACCTATAATGCCAGAACAACCTAGCATGGGATACACTGGAGATCTTATGATGAACAAATACGCAACAGCTG
GTTTCAATAGAGAGGCTGTGGCCATAGCAGTTGCAAATTATGGTGATAATCCGATCAAGGTGAAGGAATTTGTGGAGGGATATACTCTCTTGAAA
GAGATGGGATTCTCATCAAACAGTGTTGCAGATGCCTTACTGATGAATGAACACGATAAAGATAGGGCGGCAGCTCAATTGCTAGG
ATCACACGCCTCCTCCGTCTTCAAACACTGGAATCGGCATCAGAGTTGCTATTAAACCCGAATATCGGATTACACCTCCGCCTCAATTGTCAACA
CAAGTGGGAGAAATTCCCCGAAGCACATTCAACTTTGATTTTGACCTTGAGAAAAAGATTTTGGCTGAAGCAGAAAAGGAAAGCCAGAACTGGAG
CAAGCTAGGGCTGGAAAATCTTCCACCTATAATGCCAGAACAACCTAGCATGGGATACACTGGAGATCTTATGATGAACAAATACGCAACAGCTG
GTTTCAATAGAGAGGCTGTGGCCATAGCAGTTGCAAATTATGGTGATAATCCGATCAAGGTGAAGGAATTTGTGGAGGGATATACTCTCTTGAAA
GAGATGGGATTCTCATCAAACAGTGTTGCAGATGCCTTACTGATGAATGAACACGATAAAGATAGGGCGGCAGCTCAATTGCTAGG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378514] | SGN-U574830 | Tomato 200607 | Build 2 | 27 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1371 [Download][View] | Facility Assigned ID: TUS21G5.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.976 | Expected Error Rate: 0.0077 | Quality Trim Threshold: 14.5 |
Working
