EST details — SGN-C175478

Search information 
Request: 175478Match: SGN-C175478
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C175478Clone name: TUS-21-H4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175478 is on microarray TOM1 spot ID 1-1-5.4.13.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C15336 [cLED-11-K10] Trace: SGN-T51506 EST: SGN-E235496 Direction: 5' Facility: TIGR
Clone: SGN-C175478 [TUS-21-H4] Trace: SGN-T190653 EST: SGN-E378039 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E378040Length: 681 bp (941 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E378040 [] (trimmed) CAGGTACTACACTATTCAGTAAGTGAATTATTAGTATATTTAAAATTATTTAAAATGGCGTTCGCCGTCGCACCGGGAAGCTTTTGTATGCCGGC
CATGGCTGCAAACGCCGGGCACAACCGTACTCCGATGGCCATCGGAATTGGACGCGTGTCAGTTGCTAATTCGCGCGTTCCTTTCGTTTGCTTAG
CCAGTACCGGTAAAAAGGAGGAAATTAGTACAGATAAGGCACCAGCTGCAGTGGGCCCATATTCTCAAGGAATTAAGGCTAATAATTTCATTTAT
GTATCTGGTTCTCTAGGTCTTATTCCTGAGACTGGAGAACTCATATCAGACAATGTGGAGGATCAAACAGAACAGGCTCTGAAAAATATTGGGGA
GATACTTAAAGCTGGCGGTGTTAGCTATTCTGCAGCTGTTAAAACAACAATTATGTTGGCTGATCTAGGGGACTTTCAGAAAGTCAATGCAATTT
ATGCTAAATATTTTCCAGATCCTGCACCAGCACGTTCAACTTTTCAAGCAGCAGGATTACCTCTGAATGCAAAAATTGAAATTGATTGCATAGCA
GTGTGTTAAACAGATTAAAGTCTTCAACTTCCATGGCAGCTATGACTTTAGATTCAAAAATTAAAGTTAAATAAAGGAGATTTAAGTCTTTAATT
CAGAGTCTCTTGATAC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E378040] SGN-U577010 Tomato 200607 Build 2 102 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T190654 [Download][View] Facility Assigned ID: FA0AAD9DD02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.977 Expected Error Rate: 0.0063 Quality Trim Threshold: 12.5