EST details — SGN-C175938

Search information 
Request: 175938Match: SGN-C175938
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C175938Clone name: TUS-22-K8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C175938 is on microarray TOM1 spot ID 1-1-1.3.11.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C17435 [cLED-19-K24] Trace: SGN-T53424 EST: SGN-E237510 Direction: 5' Facility: TIGR
Clone: SGN-C175938 [TUS-22-K8] Trace: SGN-T180573 EST: SGN-E368094 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E368095Length: 646 bp (925 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E368095 [] (trimmed) TGGAGATCTTAATAATCTTGGTATCTACAAAACTACTTTTGAATCAACTGGATCTCAACAAACAGCTACTACCACCACAACTACTATGAATTTGT
TACCAATGATTGAGAAATCAAGTGATTCATCGTCGTCATCGTCGTCCGTTGAAACAAATCCTCAAAAACCCATGAATCTTTTCCCTCAAGAATTT
GATTTCTCCAAAGAACAATCCACAAAAAAGACAGAATCTTGGAAACCTGATCAACCAGAGAAGGCACAAATGACCATTTTTTATGGTGGACAAGT
CATTGTTTTTGATGATTTTCCAGCTGATAAAGCAAATGAAATCATGAAGTTAGCCAACAAACAGAACCCCACAAACAATTTCACTTATCCTATGA
TCAAGAATCAAAAAACAGCTGATCAATCTGGTGTGAGTTTTGGTAACAAATTGATTCAAGAACTTCCTAAACTGTCAATGCCACAGCCTTCTGTT
GCTGATTTACCAATCGCGAGACGGAATTCACTTACAAGATTCTTGGAGAAAAGGAAAGATAGAGTAACATCAATTGCACCATACCAAATCTTCAA
CAACAAGAAATCCAAGAATGAGGATAACAAAGCATGGTTGGGATTAGGTGCTCAATTTGTTAAAACTGAGCAATAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E368095] SGN-U579837 Tomato 200607 Build 2 55 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T180574 [Download][View] Facility Assigned ID: FA0AAD10BF04RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.950 Expected Error Rate: 0.0127 Quality Trim Threshold: 14.5