EST details — SGN-C175989
| Search information |
| Request: 175989 | Match: SGN-C175989 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C175989 | Clone name: TUS-22-M11 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C175989 is on microarray TOM1 spot ID 1-1-6.1.11.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C18633 [cLED-24-B6] | Trace: SGN-T54891 | EST: SGN-E240994 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C175989 [TUS-22-M11] | Trace: SGN-T180466 | EST: SGN-E367852 | Direction: 3' | Facility: INRA |
| Clone: SGN-C175989 [TUS-22-M11] | Trace: SGN-T180467 | EST: SGN-E367853 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378517 | Length: 904 bp (1266 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378517 [] (trimmed)
TCCTTATGAATTCGGCACCAGCTTTAGACTCTGATCCTCGTTCTTATGTATTTGGAGAAGATGTTGGTTTTGGTGGTGTCTTTCGTTGCACTACT
GGGCTAGCTGACCGATTTGGTAAACAGAGGGTCTTTAACACTCCTCTGTGTGAGCAGGGCATAGTTGGATTTGCGATTGGTCTTGCTGCAATGGA
CAATCGAGCTGTAGCAGAAATTCAATTTGCAGATTATATATTTCCTGCTTTTGATCAGATTGTCAATGAAGCTGCGAAATTCAGATACCGGAGTG
GTAACCAGTTCAACTGCGGAGGTTTAACTATAAGAGCACCTTATGGAGCTGTTGGACATGGTGGGCATTACCACTCTCAATCCCCTGAATCTTTC
TTCTGCCATGTTCCTGGTATAAAGGTGGTCATCCCACGCAGTCCACAGCAAGCAAAAGGATTGCTGTTGTCAAGCATACGTGACCCAAATCCAGT
TGTTTTTTTTGAACCAAAGTTGCTTTACCGGATGGCTGTTGAAGAAGTTCCTAAAGATGATTATATGTTGCCTCTATCTGAGGCAGAGGTCCTCA
GGGAAGGTACTGATATCACATTAGTTGGTTGGGGAGCTCAGCTATCTATTATGGAGCAGGCATGTGTAGAAGCTGCAAAGGAGGGGATCTCTTGT
GAACTGATAGACCTTAAAACTTTAATACCTTGGGACAAGGAAACGGTAGAGGCCTCTGTCAAAAAGACAGGAAGGCTGCTGATTAGTCATGAAGC
TCCTGTGACAGGTGGATTTGGTGCTGAAATATCTGCATCTATAGTTGAACGTTGCTTCACGAGATTAGAAGCTCCAGTGGCCAGAGTGTGTGGGT
TAGATACTCCTTTTCCTCTGGTGTTTGAGCCCTTCTACTTGNCCTACAC
GGGCTAGCTGACCGATTTGGTAAACAGAGGGTCTTTAACACTCCTCTGTGTGAGCAGGGCATAGTTGGATTTGCGATTGGTCTTGCTGCAATGGA
CAATCGAGCTGTAGCAGAAATTCAATTTGCAGATTATATATTTCCTGCTTTTGATCAGATTGTCAATGAAGCTGCGAAATTCAGATACCGGAGTG
GTAACCAGTTCAACTGCGGAGGTTTAACTATAAGAGCACCTTATGGAGCTGTTGGACATGGTGGGCATTACCACTCTCAATCCCCTGAATCTTTC
TTCTGCCATGTTCCTGGTATAAAGGTGGTCATCCCACGCAGTCCACAGCAAGCAAAAGGATTGCTGTTGTCAAGCATACGTGACCCAAATCCAGT
TGTTTTTTTTGAACCAAAGTTGCTTTACCGGATGGCTGTTGAAGAAGTTCCTAAAGATGATTATATGTTGCCTCTATCTGAGGCAGAGGTCCTCA
GGGAAGGTACTGATATCACATTAGTTGGTTGGGGAGCTCAGCTATCTATTATGGAGCAGGCATGTGTAGAAGCTGCAAAGGAGGGGATCTCTTGT
GAACTGATAGACCTTAAAACTTTAATACCTTGGGACAAGGAAACGGTAGAGGCCTCTGTCAAAAAGACAGGAAGGCTGCTGATTAGTCATGAAGC
TCCTGTGACAGGTGGATTTGGTGCTGAAATATCTGCATCTATAGTTGAACGTTGCTTCACGAGATTAGAAGCTCCAGTGGCCAGAGTGTGTGGGT
TAGATACTCCTTTTCCTCTGGTGTTTGAGCCCTTCTACTTGNCCTACAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378517] | SGN-U585832 | Tomato 200607 | Build 2 | 60 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1381 [Download][View] | Facility Assigned ID: TUS22M11.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.977 | Expected Error Rate: 0.0092 | Quality Trim Threshold: 14.5 |
Working
