EST details — SGN-C176016

Search information 
Request: 176016Match: SGN-C176016
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C176016Clone name: TUS-22-N14
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C176016 is on microarray TOM1 spot ID 1-1-3.2.11.11 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C18702 [cLED-24-F2] Trace: SGN-T54901 EST: SGN-E241004 Direction: 5' Facility: TIGR
Clone: SGN-C176016 [TUS-22-N14] Trace: SGN-T180866 EST: SGN-E368684 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E368685Length: 564 bp (947 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E368685 [] (trimmed) CAGGTAGAGTTACAAAAGTCTTCAGGGGATTCAACAGTATATAGACAGATGTGTAATAGGTTATCGAATGATTTGGGAGTCCACCGTAATGAGGA
GCTCCTACCTACTGTTTGTTGTGATAGCTAGACCATTTGCAGCGGTGACTGGATACATTCTTTCGTTCTTTTTGTTCCTATTCTCCTGCTCTTGT
TGAGTAGTAGCAGGAGTTGTGAGCAGTAAGCACACCCTTCAAGTTGGTTGGTTGATTCATCAGTTTCGCGAGATTAAAGTGTACAGTAAGGAACA
ACATGGCGGAAATCGCCTTATAAGTTAGTACATTCAAGTAAATCTGTATCTTATAGTGTCTATTATTTAGTCTCTAGGCAAATATTTTCTTTGGA
ACATGGCTATAGTAGCCTAGTTGATTTGTAAATTTAGCAAAATTTGTATTCTGTAGTATCAATTATTTGTAGCTTGGTCTTTACTTTGAAAGACT
CCAAGCAAGATGTCCTTTTTTGAAAAAAAAAAATAATAATAATAATGCTTCATGCAGCTTTATGTAATTAAGAGAAAGTTACTTTTTGC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E368685] SGN-U575600 Tomato 200607 Build 2 39 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T180867 [Download][View] Facility Assigned ID: FA0AAD10DG07RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.942 Expected Error Rate: 0.0038 Quality Trim Threshold: 12.5