EST details — SGN-C178804

Search information 
Request: 178804Match: SGN-C178804
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C178804Clone name: TUS-30-B18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178804 is on microarray TOM1 spot ID 1-1-7.2.2.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70746 [cLER-15-M16] Trace: SGN-T95184 EST: SGN-E282664 Direction: 5' Facility: TIGR
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Sequence 
Sequence Id: SGN-E372036Length: 700 bp (925 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E372036 [] (trimmed) ATGAAAGTAAACTTGAGTTTGGACAAAATATATTTGGGAGGACAATTCTCCCACAAGAATATTACACATAGAAGAACAATATCTAAAGAATCAGT
CTTTCTTTGTTGTAGTTGCATCACAGGAGTATAAAATTACAGAAAGGGGAAAAGTAACAGAGACAACTTTATTCTCTTCAAACCAACCCCAATCA
AGAACAATTATATAGAGGAAAAAAAGCATAGCACATAAACCTTTTTCCACTTTACCCCATCTTTGTTCCTATACAGTGGAATATAATCCAACCAC
TTAATCTTCCCCCACCCCATCCAGAATGAATACTAATTAGACCAAAAACAAAAAAAAAATTGTACCTTTGTGTGGCATCATCAAGATTGAATCTT
TCAAACTATCATCAGTGTGCTGTTACTTTAGATCTCTTCTTTGCCTCACTGTAAAGCACCACACCCATTACAGGCACAGCAAATCCTGTTATGCC
CATGATGTTCACTGGATTCCTGAATATCAAAACTGACACCACTGCAGCCACTGCAGCCTTGGCATTCCCCAAAACTTGCAGTGTCAAGGCACTTG
TATGCTTAGTAACCAAGACATTAGTCAAGTTCACCAAATAAGCAACTGTGGCATTACCAATCAACAAGAAAACCATAAATCCATCTCCCTTAGCT
GTCTCCACTGTAACTTGCACTACATTCCCCTCTAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E372036] SGN-U576336 Tomato 200607 Build 2 12 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T184828 [Download][View] Facility Assigned ID: FA0AAD18DA09FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.945 Expected Error Rate: 0.0136 Quality Trim Threshold: 14.5