EST details — SGN-C179539

Search information 
Request: 179539Match: SGN-C179539
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C179539Clone name: TUS-32-A9
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179539 is on microarray TOM1 spot ID 1-1-8.1.1.14 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C82370 [cLET-1-L23] Trace: SGN-T102684 EST: SGN-E292410 Direction: 5' Facility: TIGR
Clone: SGN-C179539 [TUS-32-A9] Trace: SGN-T185708 EST: SGN-E373045 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E373046Length: 629 bp (936 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E373046 [] (trimmed) TAAAAGTGAACAGGGTGTGAAGAGCTACAGTTCTGTATGTGGGGGTTGTTAGATCGTGTGATTTTTTGGAATTAACGGTTGATATTTCTGGGTTT
TGGAACTGAAGAGAATTTAATTGGGTAAAACTGGGTTTCTTCTATTTTAGGACTCAACGAGTACTGATTCAGCAGAAATGACTATAGGGGATCAA
AGCGAGTCGGACTCGATACTTCCTTGTAGGAATAGGATGTCAGTTGATGTTGGAGCTCCTTCTCCAAGGAGTATCCAGATGGATGAGCAAGTTAA
TCCAGGAGAAGAATATGCTCCTAAGATAAGAAAACCATACACCATTTCAAAGCAAAGGGAGAGGTGGTCTGAGGAAGAGCACAAAAAGTTCCTTG
AAGCATTAAAGCTTCATGGTAGGGCATGGCGACGAATAGAAGATCATGTGGGAACTAAAACTGCAGTTCAGATTAGAAGCCATGCTCAGAAGTTC
TTTTCAAAGGTTGTTCGTGAATCGAGTAATGGTGATGCAAGCTCTGTGAAATCCATTGAGATCCCTCCTCCTCGGCCTAAAAGAAAGCCGATGCA
CCCTTATCCAAGAAAAATGGCAACTCCACTTAAAAGTGGAACCCTGCCTTCAGAGAAAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E373046] SGN-U563553 Tomato 200607 Build 2 21 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T185709 [Download][View] Facility Assigned ID: FA0AAD20AA05RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.970 Expected Error Rate: 0.0061 Quality Trim Threshold: 14.5