EST details — SGN-C179830
| Search information |
| Request: 179830 | Match: SGN-C179830 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C179830 | Clone name: TUS-32-M12 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C179830 is on microarray TOM1 spot ID 1-1-5.1.1.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C80936 [cLET-13-N18] | Trace: SGN-T105869 | EST: SGN-E294026 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C179830 [TUS-32-M12] | Trace: SGN-T185944 | EST: SGN-E372449 | Direction: 3' | Facility: INRA |
| Clone: SGN-C179830 [TUS-32-M12] | Trace: SGN-T185945 | EST: SGN-E372450 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378777 | Length: 591 bp (1185 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378777 [] (trimmed)
GACGTTGCAGCTCCGATCACTGGGCAACACTGGACTCAAACTCAGCTCTGTCGGCTTCGGCGCTTCGCCTCTCGGCAAGGTTTTCGGCGATGTCT
CCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTATTATGGAGGAACATTATCGGAA
AAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTT
TAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTG
GGTCCCTCGATCAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCT
TTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTTCACTTT
GGAGGATCTGTTACCGTACTT
CCGAACAAGACGCCTTCGACGCCGTCCGGGAAGCCTTTCGCCTCGGTGTCAATTTCTTTGATACTTCCCCGTATTATGGAGGAACATTATCGGAA
AAGGTACTAGGGAAAGCTTTGAAGGCTCTTAAAGTCCCTAGAGATCAGTACATTGTGTCTACAAAATGTGGGAGGTACAAAGAGGGATTTGATTT
TAGTGCTGAGAGAGTGACTAAAAGTATTGATGAGAGCTTGGAGAGGCTGCAGCTTGATTATGTTGATATGTTACAATGTCATGATATTGAATTTG
GGTCCCTCGATCAGATTGTGAATGAGACACTTCCCGCCCTTCTAAAATTGAAGCAAGCTGGAAAGATCCGTTTCATTGGTATAACCGGCCTACCT
TTGGGGATATTCACTTATGTGCTTGATCGCGTCCCTCCAGGCACAGTTGACGTCATCCTGTCATATTGTCACTACAGTGTCAACGATTTCACTTT
GGAGGATCTGTTACCGTACTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378777] | SGN-U565558 | Tomato 200607 | Build 2 | 17 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1558 [Download][View] | Facility Assigned ID: TUS32M12.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.988 | Expected Error Rate: 0.0041 | Quality Trim Threshold: 14.5 |
Working
