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EST details — SGN-C181946

Search information 
Request: 181946Match: SGN-C181946
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C181946Clone name: TUS-38-E16
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C181946 is on microarray TOM1 spot ID 1-1-1.1.10.12 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C6897 [cLEC-37-D13] Trace: SGN-T31224 EST: SGN-E208233 Direction: 5' Facility: TIGR
Clone: SGN-C181946 [TUS-38-E16] Trace: SGN-T194792 EST: SGN-E393466 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E393252Length: 540 bp (872 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E393252 [] (trimmed) TGCCAGTCATACCTCTGTTCTTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATGAGATCCTTGAATAATATCCTAGAAAATT
CATGATTTATTCGAGAAAAAATTCGAAAATCGATAAAATCAGATAAGCTTTACCGTTTGAAATCTCGATTCAAACATTGAAATTCTTGGATAGTC
ACGAGAAATCCGGCTTAGCTTAATTTCCTTCTTTTTTGGCGCTTTCCTTTCCAGTGAAAGACCTTATTAGGCTCCTCTTGTGTATATAAAAAATT
TGGTTAATGACAAACTCTTATTATAAAAGAATTTCTGAAAATTCTTTTAGAGAAAAAGCTTCGTTGCTTGGTGTCAAACTAGGATATGCGATGGA
TGATCTATTCTCTTTTTTTTTTTCAAAAAAATCATCTTGGAGATTGTGTAATGCTTACTCTCAAACTCTTCGTTTACACAGTAGTGATATTTTTT
GTTTCTCTCTTCATCTTTGGATTCCTAATCTATGATCCCGGACGTAATCCTGGACGTGAAGAATA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E393252] SGN-U586138 Tomato 200607 Build 2 15 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194578 [Download][View] Facility Assigned ID: FA0AAD26BC08RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.927 Expected Error Rate: 0.0076 Quality Trim Threshold: 14.5