EST details — SGN-C182112
| Search information |
| Request: 182112 | Match: SGN-C182112 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C182112 | Clone name: TUS-38-L14 |
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| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C182112 is on microarray TOM1 spot ID 1-1-3.4.10.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C84435 [cLET-28-M23] | Trace: SGN-T109493 | EST: SGN-E297699 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C182112 [TUS-38-L14] | Trace: SGN-T187732 | EST: SGN-E374462 | Direction: 3' | Facility: INRA |
| Clone: SGN-C182112 [TUS-38-L14] | Trace: SGN-T187733 | EST: SGN-E374463 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378208 | Length: 468 bp (998 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378208 [] (trimmed)
CTCAGGTCAAAGTTTGCTCACATTATTGTTTTCTTTCTTCTTGCAACTTCCTTTGAGACTCTCATGGCACGAAAAGAAATTGGTGGACCAGAAGT
CATCGAACTTCTAAAGGAATATGAATCTAACTTGATGTGCAAAGGAAAACGAATGTGGCCAGAACTTATTGGTGTACCAGCACAATATGCTAAGG
GAATAATTGAAAAGGAAAATCCATTCATAACTGATGTTCGGATAGGATTGATTGGTTCTCCAGGCACAGCTGATTTTAAGTGTTTTCGAGTTCGT
ATTGCTGTAAACATCTTGGATGTTGCTGTATCAATGCCTGTGATTGGTTAATTAATGAAGTAATTAAGTAGCCACATGTCAAAAAATAATTAGGG
TTCATGTCTGTTCATTAATTATAATGTACCCATGCATGTACTCTTANCATACATAATGGAATAAATAAGTGTGACTTGATTAAATATT
CATCGAACTTCTAAAGGAATATGAATCTAACTTGATGTGCAAAGGAAAACGAATGTGGCCAGAACTTATTGGTGTACCAGCACAATATGCTAAGG
GAATAATTGAAAAGGAAAATCCATTCATAACTGATGTTCGGATAGGATTGATTGGTTCTCCAGGCACAGCTGATTTTAAGTGTTTTCGAGTTCGT
ATTGCTGTAAACATCTTGGATGTTGCTGTATCAATGCCTGTGATTGGTTAATTAATGAAGTAATTAAGTAGCCACATGTCAAAAAATAATTAGGG
TTCATGTCTGTTCATTAATTATAATGTACCCATGCATGTACTCTTANCATACATAATGGAATAAATAAGTGTGACTTGATTAAATATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378208] | SGN-U581582 | Tomato 200607 | Build 2 | 35 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1703 [Download][View] | Facility Assigned ID: TUS38L14.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.960 | Expected Error Rate: 0.0150 | Quality Trim Threshold: 12.5 |
Working
