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EST details — SGN-C182236

Search information 
Request: 182236Match: SGN-C182236
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C182236Clone name: TUS-39-A18
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182236 is on microarray TOM1 spot ID 1-1-7.1.8.21 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C16944 [cLED-18-B17] Trace: SGN-T53127 EST: SGN-E237824 Direction: 5' Facility: TIGR
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T194836 EST: SGN-E393510 Direction: 3' Facility: INRA
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T194836 EST: SGN-E399500 Direction: 3' Facility: INRA
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T194837 EST: SGN-E393511 Direction: 3' Facility: INRA
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T194838 EST: SGN-E393512 Direction: 5' Facility: INRA
Clone: SGN-C182236 [TUS-39-A18] Trace: SGN-T199389 EST: SGN-E398063 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E398807Length: 645 bp (861 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E398807 [] (trimmed) GATCAACAGTAGATGGAACTTCCGCCGGGATTTCGCTTTCATCCTACAGATGAAGAGCTAATTACTCATTATTTGTCTAAGAAAGTGGTTGATAT
GAATTTCTCTGCTATTGCTATTGGAGATGTTGACATGAACAAAATTGAACCTTGGGAGCTTCCATGGAAGGCGAAAATTGGGGAAAAAGAATGGT
ACTTTTTTTGTGTGAGAGACAAGAAGTATCCAACTGGTTTGAGGACAAACAGGGCAACTGCTGCAGGTTACTGGAAAGCTACAGGAAAAGACAAG
GAGATTTTTAGAGGAAGATCTCTTGTTGGGATGAAGAAAACTTTGGTTTTTTACAGAGGAAGGGCTCCAAGAGGTGAAAAAACAAATTGGGTAAC
TCATGAATATAGATTAGAAGGAAGATTATCACTAAACAATCTTCCTAAAACAGTAAAGAATGATTGGGTGATTTGCAGAGTATTTCAAAAAACAA
CTGGTGGAAAAAAAATTCACATTTCAGGGCTTGTGAGAGCTAATTCTGATGAAAATGAAATGGTCAATACCGTTTTGCCACCATTGACAGATTCA
TCGCCTAGCCACGTGCACTGCTTCTCCAATTATGTTACTACTCAAAAAAATCAAGAAAACAACATGATCATTTCC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E398807] SGN-U567211 Tomato 200607 Build 2 18 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T194838 [Download][View] Facility Assigned ID: FA0AAD27BA09RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.956 Expected Error Rate: 0.0053 Quality Trim Threshold: 14.5