EST details — SGN-C182862

Search information 
Request: 182862Match: SGN-C182862
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C182862Clone name: TUS-40-K20
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C182862 is on microarray TOM1 spot ID 1-1-5.3.5.8 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C128067 [cTOC-4-F10] Trace: SGN-T136867 EST: SGN-E324294 Direction: 5' Facility: TIGR
Clone: SGN-C182862 [TUS-40-K20] Trace: SGN-T187880 EST: SGN-E375986 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E375987Length: 649 bp (891 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E375987 [] (trimmed) GGAAATATGAGAATTGTAATGTTGCCATACTTAGCTTATGGCCACATCACACCTTTTCTTGAACTAGCCAAGAAACTCTCAAACAGAGGTTTCTC
CATTCACATATGTTCTTCTCCCATCAATCTTAGCTTCATCAAGGCAAAAATCCCAGAAAAGTACTCTTCCTCAATTCATTTAGTTGAACTTCACT
TACCAAATTTACCTGAACTTCCTCCTCATCACCACACTACCAATGGCCTTCCAAATCATCTTAAACAAACTCTTTTCAAAACACTTAAGATGACC
AAACCACAGCTTCACCAAATCTTGAGTGACTTGAAACCTGATTTTTTTATTTATGATATCATGTTACTATGGTCAGCTGTAGTTGCATCTTCACT
CAACATCCCATCGTTAAGATTCTACACTGTAAACGCAGCCATTTTTAGTTATTTTTTCCATTTTTATTTCAATCCAGGAGAGGAATTCCCTTTCC
CAGCTCTCTATATGAGGGATTATGAGCTAGCGAAGATGACACATGAAGTTGCTGATGATGCGGAGGTTGAAGTTGACAGAGACAAAGTTACTGAG
TCCGATAAATTTGTACTTGTTCATAGCACTAAATCAATAGATGGGAAGTACATGGATTATCTTTGCGGAACAAGGCAGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E375987] SGN-U564478 Tomato 200607 Build 2 24 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T187881 [Download][View] Facility Assigned ID: FA0AAD28BF10RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.948 Expected Error Rate: 0.0030 Quality Trim Threshold: 14.5