EST details — SGN-C183440

Search information 
Request: 183440Match: SGN-C183440
Request From: SGN database generated linkMatch Type: cDNA clone internal identifier
Clone information 
SGN ID: SGN-C183440Clone name: TUS-42-C22
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183440 is on microarray TOM1 spot ID 1-1-3.3.1.6 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C110360 [cLPT-4-J11] Trace: SGN-T178168 EST: SGN-E364767 Direction: 5' Facility: TIGR
Clone: SGN-C183440 [TUS-42-C22] Trace: SGN-T196012 EST: SGN-E394686 Direction: 5' Facility: INRA
Clone: SGN-C183440 [TUS-42-C22] Trace: SGN-T196128 EST: SGN-E394802 Direction: 3' Facility: INRA
Clone: SGN-C183440 [TUS-42-C22] Trace: SGN-T200281 EST: SGN-E399235 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E399571Length: 700 bp (883 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E399571 [] (trimmed) TAGTTGAGCCACCAACAAGAACAATATCATGAACACCACTCTTGTCAATTTTAGCATCCCTCAAACACTTCTCAACAGGCTCCATACATTTTCTG
AAAAGATCCATGTTGAGCTCCTCAAAACGAGCACGGGTGATCGTTGTGTAGAAATCAATACCCTCATAAAGAGAATCAATTTCAATAGTTGTCTG
AGCAGTGGATGAGAGTGTTCTCTTAGCTCTTTCACATGCAGTTCTTAATCTCCTAAGAGCTCTGGGATTCCCACTGATGTCCTTCTTGTGCTTCC
TCTTGAATTCTTGAACAAAGTGATTAACCATCCTGTTGTCAAAATCTTCTCCACCAAGATGAGTATCACCAGCAGTAGCTTTCACTTCAAAAATA
CCTTCCTCAATAGTAAGTAGTGAGACATCAAACGTACCACCACCCAAGTCAAAAATAAGCACAGTTTTCTCCCCTGTACTACTTGATTTCTTATC
AAGTCCATATGCAATTGCAGCAGCAGTAGGCTCGTTGATAATACGCATAACATTGAGCCCAGAAATAGTTCCAGCATCCTTAGTAGCCTGACGTT
GAGAGTCATTGAAATACGCAGGCACAGTAACAACAGCATTCTTTATTGTTGTTCCAAGAAAAGCCTCAGCTATCTCCTTCATCTTAATAAGAACC
ATAAAGGAGATTTCTTCAGCAGAGAACTGTTTCTC
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E399571] SGN-U579872 Tomato 200607 Build 2 71 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T196012 [Download][View] Facility Assigned ID: FA0AAD30BB11RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0037 Quality Trim Threshold: 12.5