EST details — SGN-C183457
| Search information |
| Request: 183457 | Match: SGN-C183457 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C183457 | Clone name: TUS-42-D15 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183457 is on microarray TOM1 spot ID 1-1-2.4.1.2 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C32468 [cLEG-1-M7] | Trace: SGN-T64445 | EST: SGN-E248382 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183457 [TUS-42-D15] | Trace: SGN-T196191 | EST: SGN-E394865 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183457 [TUS-42-D15] | Trace: SGN-T196191 | EST: SGN-E399352 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183457 [TUS-42-D15] | Trace: SGN-T200343 | EST: SGN-E399353 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378721 | Length: 1566 bp (untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378721 [] (untrimmed)
NNNNNGGCCCTAANCTCGGANTCNNNNNTNNANNNGCCNGNGNTCTTANGTGTGAGCGCTCTGCCTTCTACNCACCGCNCGCGCGCTGAGTGTGA
GAGGGTTGNCTATATCACGACCAGCACGCAGAATNTTGTGTGTGGNTCCTCTCTCTATTCNCGCCGCGCGCGTTTTTCTNTGGGGTGTGTTTCTA
TTACACAGCGCGGCGGCGNNNTNNTTTNTNCCCTCTCCTCTCCCACGCGCCGCGCGCCCTCTTTTGTGGTGCCTCTTCCTTCTACTCGCCGCGGC
CCCTCTTTNNTTCGCCTTTCTCTCCCCCCGCGGCGCGGNNNNGNGNNNNGGGTAGCTTCTCTGCCGGCGGGCCGCCGGTGTGTGGGACCCCGCCC
GCGGCGGGGGGGGGGGCGGTNGAACTAACCCAAAACAAACCANNNNNTNCTNNTNTTTTTTCACTATTCCCCTTACATANTCCTTCTACTTTTCC
CATACTCTCATCCACATCTTNCCACTACATTAAACTGCTAGAAGAACGTCGTTGGCATGAGGATGGAGACGCGAAGTCGGTCTTAGTGGCCGAGT
CGCGGGCTCGCATCCCGCGGGTGGGCGTCTTCGGACTGCTGTCACTTTCTGGTGAGGACCCCACTGATCACGGGGCTCCGGCGGACTGGGTATTG
TCCAACCAGTTCTACGCTGGCGCGGCGGGCGTACGGTGGTCGACGGCGAGATGGCGATGCCGACGAGCGTGAACTGGCCGTGGGCGTTCGCGTCA
TCATGCTCGTGTAGCGGCGCCCCCCGTCGCGGTGGAGCGGCGTTGGGCCAGCAGCCTCTCTCTCATCTCTCCCTCCCTAATATACGGGGCGGGGG
GTGCGGGGGGGGGGGGGGTTTCCCAATCTTATCACTTCACCGCGAGAGGCGGGGCTGGTATTCGTCTGCCGTGCGGGGCAGTGTGGCGGGGGCCG
GGACTTAATTTAGAGTAGTACCTACGTCGCCCCCGCCGCAGGCGCGGAGTNCTGTCGCTTCTGAANGCTGGGTAATGGAATCGGTGTAGACGCAA
TAGCACCGTGGCTGGTGTTGTTCGCCACATAGAGGAAGTGATTTATTCTGTTAGAAGTGTGCGCTATGGAGAGCGTGAACGGGAGATGAGAGTNT
TGAGGTCTGGCCAGTCTGCTGCCACCCCGTGGTGCGCGGGCGCCCGCCCCACACAACATGGGCCTGCTCGTGTGCTCGTTACTACGAGTTCTTCG
GCACCTGCTTCTCGCCTGGAACTAGCGGGGCAGTGCGGGCTNAGGGGCGGGTGAGACGAGGGTAGCAGTGGACTGGGGGCTGTTACGGGAGGGAG
TGTTCGAGCGGCGGTTGCTGGCGCCGTTCGGTGGACGGGCTCGCGTCGCCCTGAGGCCGCCTCTCGTCTCTCCGCGCCCGTCTCCTACCTCCTCC
CGCGCACGCTCGCCTTGTCTGCGGGCGCAGCATCGCGGGGTGGCGTGGGCGTAGCAGAAAGAGGGAGTCGGGTGGAGGCGGGCGCTCGGTCGCCG
GCTCCCCCTGCAGTTAGAGCTCACGTCCCCTCCTCGTGTGCACTCC
NNNNNGGCCCTAANCTCGGANTCNNNNNTNNANNNGCCNGNGNTCTTANGTGTGAGCGCTCTGCCTTCTACNCACCGCNCGCGCGCTGAGTGTGA
GAGGGTTGNCTATATCACGACCAGCACGCAGAATNTTGTGTGTGGNTCCTCTCTCTATTCNCGCCGCGCGCGTTTTTCTNTGGGGTGTGTTTCTA
TTACACAGCGCGGCGGCGNNNTNNTTTNTNCCCTCTCCTCTCCCACGCGCCGCGCGCCCTCTTTTGTGGTGCCTCTTCCTTCTACTCGCCGCGGC
CCCTCTTTNNTTCGCCTTTCTCTCCCCCCGCGGCGCGGNNNNGNGNNNNGGGTAGCTTCTCTGCCGGCGGGCCGCCGGTGTGTGGGACCCCGCCC
GCGGCGGGGGGGGGGGCGGTNGAACTAACCCAAAACAAACCANNNNNTNCTNNTNTTTTTTCACTATTCCCCTTACATANTCCTTCTACTTTTCC
CATACTCTCATCCACATCTTNCCACTACATTAAACTGCTAGAAGAACGTCGTTGGCATGAGGATGGAGACGCGAAGTCGGTCTTAGTGGCCGAGT
CGCGGGCTCGCATCCCGCGGGTGGGCGTCTTCGGACTGCTGTCACTTTCTGGTGAGGACCCCACTGATCACGGGGCTCCGGCGGACTGGGTATTG
TCCAACCAGTTCTACGCTGGCGCGGCGGGCGTACGGTGGTCGACGGCGAGATGGCGATGCCGACGAGCGTGAACTGGCCGTGGGCGTTCGCGTCA
TCATGCTCGTGTAGCGGCGCCCCCCGTCGCGGTGGAGCGGCGTTGGGCCAGCAGCCTCTCTCTCATCTCTCCCTCCCTAATATACGGGGCGGGGG
GTGCGGGGGGGGGGGGGGTTTCCCAATCTTATCACTTCACCGCGAGAGGCGGGGCTGGTATTCGTCTGCCGTGCGGGGCAGTGTGGCGGGGGCCG
GGACTTAATTTAGAGTAGTACCTACGTCGCCCCCGCCGCAGGCGCGGAGTNCTGTCGCTTCTGAANGCTGGGTAATGGAATCGGTGTAGACGCAA
TAGCACCGTGGCTGGTGTTGTTCGCCACATAGAGGAAGTGATTTATTCTGTTAGAAGTGTGCGCTATGGAGAGCGTGAACGGGAGATGAGAGTNT
TGAGGTCTGGCCAGTCTGCTGCCACCCCGTGGTGCGCGGGCGCCCGCCCCACACAACATGGGCCTGCTCGTGTGCTCGTTACTACGAGTTCTTCG
GCACCTGCTTCTCGCCTGGAACTAGCGGGGCAGTGCGGGCTNAGGGGCGGGTGAGACGAGGGTAGCAGTGGACTGGGGGCTGTTACGGGAGGGAG
TGTTCGAGCGGCGGTTGCTGGCGCCGTTCGGTGGACGGGCTCGCGTCGCCCTGAGGCCGCCTCTCGTCTCTCCGCGCCCGTCTCCTACCTCCTCC
CGCGCACGCTCGCCTTGTCTGCGGGCGCAGCATCGCGGGGTGGCGTGGGCGTAGCAGAAAGAGGGAGTCGGGTGGAGGCGGGCGCTCGGTCGCCG
GCTCCCCCTGCAGTTAGAGCTCACGTCCCCTCCTCGTGTGCACTCC
| Unigenes |
| Current Unigene builds | |||||
| No current unigene builds incorporate this sequence |
| Chromatogram |
| SGN-ID: SGN-T1761 [Download][View] | Facility Assigned ID: TUS42D15.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
| Problems: | High expected error (low overall quality) |
| Sequence Entropy: 0.000 | Expected Error Rate: 0.0097 | Quality Trim Threshold: 20.5 |
Working
