EST details — SGN-C183527
| Search information |
| Request: 183527 | Match: SGN-C183527 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C183527 | Clone name: TUS-42-G13 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183527 is on microarray TOM1 spot ID 1-1-4.3.1.3 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C2797 [cLEC-17-D8] | Trace: SGN-T27217 | EST: SGN-E203801 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183527 [TUS-42-G13] | Trace: SGN-T194933 | EST: SGN-E393607 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183527 [TUS-42-G13] | Trace: SGN-T195486 | EST: SGN-E394160 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183527 [TUS-42-G13] | Trace: SGN-T195487 | EST: SGN-E394161 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183527 [TUS-42-G13] | Trace: SGN-T195487 | EST: SGN-E399155 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183527 [TUS-42-G13] | Trace: SGN-T199643 | EST: SGN-E398317 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183527 [TUS-42-G13] | Trace: SGN-T199643 | EST: SGN-E399154 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378314 | Length: 470 bp (1114 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378314 [] (trimmed)
GTGGAATTGACGCTGTTGTTTTGTACAGCCCGAAGATTTTTGAAAAAGCCGGGATCAAGTCCGATCACGACAAGTTGCTCTGCACCGTCGCCGTC
GGAGTAGTCAAAACATTGTTCATTCTAGTAGCCACATTTATGCTTGACAGATCCGGTCGTCGGCGGTTGCTATTAACCAGTGTCGGCGGAATGGT
GGCGTCGTTGGTGCTTCTCGCGACAGGCCTCACAATTATCGAACACTCAGAACAGAAATTAATTTGGGCAATAGCACTCTGCATAGCAATGGTGT
TAGCTTACGTGGCGCTTTTCTCAATCGGTATGGGTCCGATAACGTGGGTTTACAGTTCGGAGATATTTCCGTTGAGGCTCCGGGCAACTGGATGC
AGTATAGGGGTAGCAGTGAACAGAGTAACAAGTGGAGTAGTGTCAATGACGTTTTTTGTCCCTAGAAAAGGCGAATACAATCGGAGCTGC
GGAGTAGTCAAAACATTGTTCATTCTAGTAGCCACATTTATGCTTGACAGATCCGGTCGTCGGCGGTTGCTATTAACCAGTGTCGGCGGAATGGT
GGCGTCGTTGGTGCTTCTCGCGACAGGCCTCACAATTATCGAACACTCAGAACAGAAATTAATTTGGGCAATAGCACTCTGCATAGCAATGGTGT
TAGCTTACGTGGCGCTTTTCTCAATCGGTATGGGTCCGATAACGTGGGTTTACAGTTCGGAGATATTTCCGTTGAGGCTCCGGGCAACTGGATGC
AGTATAGGGGTAGCAGTGAACAGAGTAACAAGTGGAGTAGTGTCAATGACGTTTTTTGTCCCTAGAAAAGGCGAATACAATCGGAGCTGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378314] | SGN-U565600 | Tomato 200607 | Build 2 | 65 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1766 [Download][View] | Facility Assigned ID: TUS42G13.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.987 | Expected Error Rate: 0.0020 | Quality Trim Threshold: 20.5 |
Working
