EST details — SGN-C183624
| Search information |
| Request: 183624 | Match: SGN-C183624 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C183624 | Clone name: TUS-42-K14 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C183624 is on microarray TOM1 spot ID 1-1-3.3.1.4 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C9416 [cLEC-5-N24] | Trace: SGN-T23889 | EST: SGN-E201054 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C183624 [TUS-42-K14] | Trace: SGN-T196042 | EST: SGN-E394716 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183624 [TUS-42-K14] | Trace: SGN-T196042 | EST: SGN-E399294 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183624 [TUS-42-K14] | Trace: SGN-T199658 | EST: SGN-E398332 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183624 [TUS-42-K14] | Trace: SGN-T200315 | EST: SGN-E399293 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E393723 | Length: 593 bp (831 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E393723 [] (trimmed)
TTTTACTTTGCTCTAAAAGATATTAAATTTGTTTATATTTAAGCATTATGGTGTCTCTAAATAGGAACCTCATTTTGGCATTTTTGTGTGTTTTA
TTGTGCTTTGTTGTTAGCTTTAGCAATGCCCAATTATCAGCCAATTTTTATGGGACGTCGTGCCCTAATCTGCAGACAATTGTAAGAAATGCAAT
GACACAAGCTGTGAATAGAGAGGCCAGACTTGGTGCCTCTATTCTTCGATTGTTCTTCCATGATTGCTTCGTTAACGGGTGCGATGCATCAATAC
TACTGGATGACACATCAACTTTTATAGGAGAAAAGAATGCAAATCCAAACAGAAATTCAGCAAGAGGATATGAAGTGATAGACACCATTAAAACT
CAAGTTGAAGCTGCTTGTCCTAACGTTATCTCTTGTGCGGATATTCTTGCTCTTGCTGCTCGAGAAGGCACCGTACTGCTTGGAGGGCCATCATG
GGCAGTGCCATTGGGCCGAAGAGACGCAAGGACCGCGAGCCAAAACGCCGCCAACACCCAAATCCCCGCACCATCTTTCAGTCTTGCACTTTTAA
TTTCCATGTTCTCCGCCAAAGGC
TTGTGCTTTGTTGTTAGCTTTAGCAATGCCCAATTATCAGCCAATTTTTATGGGACGTCGTGCCCTAATCTGCAGACAATTGTAAGAAATGCAAT
GACACAAGCTGTGAATAGAGAGGCCAGACTTGGTGCCTCTATTCTTCGATTGTTCTTCCATGATTGCTTCGTTAACGGGTGCGATGCATCAATAC
TACTGGATGACACATCAACTTTTATAGGAGAAAAGAATGCAAATCCAAACAGAAATTCAGCAAGAGGATATGAAGTGATAGACACCATTAAAACT
CAAGTTGAAGCTGCTTGTCCTAACGTTATCTCTTGTGCGGATATTCTTGCTCTTGCTGCTCGAGAAGGCACCGTACTGCTTGGAGGGCCATCATG
GGCAGTGCCATTGGGCCGAAGAGACGCAAGGACCGCGAGCCAAAACGCCGCCAACACCCAAATCCCCGCACCATCTTTCAGTCTTGCACTTTTAA
TTTCCATGTTCTCCGCCAAAGGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E393723] | SGN-U566251 | Tomato 200607 | Build 2 | 22 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T195049 [Download][View] | Facility Assigned ID: FA0AAD30BF07RM2 |
| Submitter: Koni | Sequencing Facility: INRA |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 14.5 |
Working
