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EST details — SGN-E202380

Search information 
Request: 202380Match: SGN-E202380
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C10858Clone name: cLEC-6-H20
cartOrder Clone
Library Name: cLECOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: combined undifferentiated and shooting callus
Development Stage: 7-10 days post germination

Microarray: Alias clone SGN-C172726 is on microarray TOM1: SGN-S1-1-5.1.20.6
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C172726 [TUS-14-E12] Trace: SGN-T195222 EST: SGN-E393896 Direction: 5' Facility: INRA
Clone: SGN-C172726 [TUS-14-E12] Trace: SGN-T195222 EST: SGN-E399043 Direction: 5' Facility: INRA
Clone: SGN-C172726 [TUS-14-E12] Trace: SGN-T195373 EST: SGN-E394047 Direction: 5' Facility: INRA
Clone: SGN-C172726 [TUS-14-E12] Trace: SGN-T195665 EST: SGN-E394339 Direction: 3' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E202380Length: 530 bp (804 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E202380 [] (trimmed) ATACAATGGGCATGGGCAAGGAAACTCTCTCCACCACAGATACAACCGGCGCTACCTTCAAGCTAGTTGGCTTCAATAATTTCATCCGTGCTAAT
CCCCGTTCCGATTTCTTCTCCGTAAAACGCTTCCACCATATCGAATTCTGGTGCGGCGATGCAACCAATACATCTCGTCGTTTCTCTTGGTCTCT
TGGCATGCCGATTACAGCAAAATCAGACCTCTCCACCGGAAATTCAGTTCATGCGTCGTATCTCCTCCGTTCTGTTTCAGGCGAACTTCAATTTG
TTTTCACTGCTCCTTATTCGCCGTCAATTTCAGTACCGTCAACGGCAGGTATACCTAGTTTTTCCACCCCTACTTATCGGGATTTTACGGCGAAG
CATGGTCTTGGTGTTCGTGCTGTTGCGTTGGAGGTGGAGAACGCTTACCTGGCGTTCTCCGCTAGTGTGGCTCGTGGGGCGAAACCCCGGTTTGA
ACCTGTAACGATTGATGAGCATGTGGCTGTTGCTGAAGTTCATCTATATGGCGAT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E202380] SGN-U578997 Tomato 200607 Build 2 75 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T24041 [Download][View] Facility Assigned ID: TCAAX46TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.981 Expected Error Rate: 0.0087 Quality Trim Threshold: 14.5