Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E231027

Search information 
Request: 231027Match: SGN-E231027
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C23620Clone name: cLED-5-O16
cartOrder Clone
Library Name: cLEDOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: ovary
Development Stage: 5 days pre-anthesis to 5 days post-anthesis

Microarray: Alias clone SGN-C174821 is on microarray TOM1: SGN-S1-1-6.4.15.14
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C174821 [TUS-19-L19] Trace: SGN-T189455 EST: SGN-E376841 Direction: 3' Facility: INRA
Clone: SGN-C174821 [TUS-19-L19] Trace: SGN-T189456 EST: SGN-E376842 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E231027Length: 336 bp (434 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E231027 [] (trimmed) CAGGTCAACACTTACCGCAGAAATTTCACCACCAAAACTGGTAAAAATGCAAGCAAAGCTCCTAAGATTCAGAGGTTAGTGACACCCCTGACATT
ACAAAGAAAGAGAGCGAGAATTGCTGACAAGAAGAAGAGAATTGCCAAGGCTAAGTCAGAGGCAGCTGATTATCAGAAGCTTCTTGCTAGTAGGT
TGAAGGAACAAAGAGAACGACGTAGTGAGAGTTTGGCTAAGAAGAGGTCTAGACTCTCTGCAGCATCTAAGCCATCTATTGCCGCTTAACTTCAG
TGGGGAGGAAAAATGACGATGAGTAGGATCTAGTTCCTGCTATTTTTTTGG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E231027] SGN-U580070 Tomato 200607 Build 2 35 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T49643 [Download][View] Facility Assigned ID: TOVAR92TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.958 Expected Error Rate: 0.0007 Quality Trim Threshold: 14.5