EST details — SGN-E246025
| Search information |
| Request: 246025 | Match: SGN-E246025 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C29752 | Clone name: cLEF-54-C8 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180452 is on microarray TOM1: SGN-S1-1-7.3.19.9
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180452 [TUS-34-G10] | Trace: SGN-T196283 | EST: SGN-E394957 | Direction: 3' | Facility: INRA |
| Clone: SGN-C180452 [TUS-34-G10] | Trace: SGN-T196284 | EST: SGN-E394958 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E246025 | Length: 669 bp (966 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246025 [] (trimmed)
AAACACAGAAAATTCTCAATAGCTCACTGAAAATGTCACTGATCCCAAGAATCTTCGGCGACCGACGAAGCACCAGCGTGTTCGATCCATTTTCA
ATTGACGTATTTGATCCATTCAAGGAATTAGGCTTCACAGTTTCAAATTCAGGGGAGACCTCTGCATTTGCCAACACTCGAATCGACTGGAAGGA
AACTCCAGAAGCTCATGTGTTCAAGGCTGATCTTCCAGGGCTTAAGAAGGAGGAAGTCAAAGTGGAGATCGAAGAGGATCGTGTTCTTCAGATCA
GCGGAGAGAGGAACGTGGAGAAAGAAGACAAGAACGATACTTGGCACCGTGTGGAACGCAGCAGCGGGAAATTCATGAGAAGATTTAGACTTCCG
GAGAATGCAAAGATGGATCAAATTAAGGCGTCTATGGAGAATGGAGTGCTTACTGTTACTGTTCCGAAGGAGGAGGTGAAGAAGCCTGATGTCAA
GTCCATTGAGATCTCTGGTTAAAATATGTGAATTTATTGTATCCTTGTATGGGCAAATAAAAAATAATCGTATCTGTAGTGTTTGAAGTCGTTCT
GTTTCTGTATTAAAGTCTTCGAATCGGCTCTGTTTCTCACCTAATGGCGTAGTTGATGTACTTGCTGTAAAATTTCATGTTGAAAGATGTAATAG
TAGT
ATTGACGTATTTGATCCATTCAAGGAATTAGGCTTCACAGTTTCAAATTCAGGGGAGACCTCTGCATTTGCCAACACTCGAATCGACTGGAAGGA
AACTCCAGAAGCTCATGTGTTCAAGGCTGATCTTCCAGGGCTTAAGAAGGAGGAAGTCAAAGTGGAGATCGAAGAGGATCGTGTTCTTCAGATCA
GCGGAGAGAGGAACGTGGAGAAAGAAGACAAGAACGATACTTGGCACCGTGTGGAACGCAGCAGCGGGAAATTCATGAGAAGATTTAGACTTCCG
GAGAATGCAAAGATGGATCAAATTAAGGCGTCTATGGAGAATGGAGTGCTTACTGTTACTGTTCCGAAGGAGGAGGTGAAGAAGCCTGATGTCAA
GTCCATTGAGATCTCTGGTTAAAATATGTGAATTTATTGTATCCTTGTATGGGCAAATAAAAAATAATCGTATCTGTAGTGTTTGAAGTCGTTCT
GTTTCTGTATTAAAGTCTTCGAATCGGCTCTGTTTCTCACCTAATGGCGTAGTTGATGTACTTGCTGTAAAATTTCATGTTGAAAGATGTAATAG
TAGT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E246025] | SGN-U578203 | Tomato 200607 | Build 2 | 63 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T63379 [Download][View] | Facility Assigned ID: TMGIF16TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0059 | Quality Trim Threshold: 12.5 |
Working
