EST details — SGN-E248927
| Search information |
| Request: 248927 | Match: SGN-E248927 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C28990 | Clone name: cLEF-49-N11 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177100 is on microarray TOM1: SGN-S1-1-7.3.8.11
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177100 [TUS-25-K18] | Trace: SGN-T1435 | EST: SGN-E378758 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C177100 [TUS-25-K18] | Trace: SGN-T181768 | EST: SGN-E369276 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177100 [TUS-25-K18] | Trace: SGN-T181769 | EST: SGN-E369277 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E248927 | Length: 442 bp (926 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E248927 [] (trimmed)
CAAAACCCAAGAACATTTTTGGCTACTGAAAATTTCCAAAAAGTACTAAAAAAAGACATCTTTTTTCAATTTTACTGCACTTTTTTGCCGCCTCC
ATCACTGAAAAAATGTTGTTCAACTTCCTCTACTATCATCTTCATCACTTTCTCATAGCTGAAAATTGCTTCAGAAAATGAAAAAGGAGACATTT
TTAAATTTCCAAGAAAAGACCATGGATGGTGTCATTAAGAGGAGGTCTTTATATGCAATTGGTTCTTGTTTTCTGCTTTTTCTCTTAGCTTACAA
CAGTTCCACTGTGTTCTATGTTCAAGTCCCTGTTCCAGGGAACTCTTCGCCGGAGATTTCAAGTTTTTTAACTGAAAATGTCGCCAGAAAATCAA
GAAAGTTGGTTTCTTTATCTACTTCAGCTAAACGTTCATCCTCTGCGATATATGCTGTAAAA
ATCACTGAAAAAATGTTGTTCAACTTCCTCTACTATCATCTTCATCACTTTCTCATAGCTGAAAATTGCTTCAGAAAATGAAAAAGGAGACATTT
TTAAATTTCCAAGAAAAGACCATGGATGGTGTCATTAAGAGGAGGTCTTTATATGCAATTGGTTCTTGTTTTCTGCTTTTTCTCTTAGCTTACAA
CAGTTCCACTGTGTTCTATGTTCAAGTCCCTGTTCCAGGGAACTCTTCGCCGGAGATTTCAAGTTTTTTAACTGAAAATGTCGCCAGAAAATCAA
GAAAGTTGGTTTCTTTATCTACTTCAGCTAAACGTTCATCCTCTGCGATATATGCTGTAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E248927] | SGN-U564723 | Tomato 200607 | Build 2 | 7 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T62435 [Download][View] | Facility Assigned ID: TMGHM78TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.941 | Expected Error Rate: 0.0054 | Quality Trim Threshold: 14.5 |
Working
