EST details — SGN-E249727
| Search information |
| Request: 249727 | Match: SGN-E249727 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C30260 | Clone name: cLEF-57-A6 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180466 is on microarray TOM1: SGN-S1-1-1.3.19.13
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180466 [TUS-34-G24] | Trace: SGN-T196294 | EST: SGN-E394968 | Direction: 5' | Facility: INRA |
| Clone: SGN-C180466 [TUS-34-G24] | Trace: SGN-T199698 | EST: SGN-E398372 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E249727 | Length: 594 bp (925 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E249727 [] (trimmed)
TCGCCGTCGCCGGCAGTCTTCGCTGAGAGCAAGACACCTCTTTGCACAAATTATGCACTATTGCTAGTAAGGTGGGAAAAAAATCAAATCAGAAA
AAGAAAATCAAACATGAATCAAGATGGAGTAAGCGTTGCGGTTGAGGGGGACATAGAAGATAGAATTAGTGTCCTACCAAGAAATGTTATTGATT
GTATCCTTGAGCTCTTGCCTATTAAAGAAGCTGCAAAAACTTGTACATTGTCCAAAAGCTGGAGATACATTTGGAGCGAGCTTCCAAAACTGGTG
CTGTATTACGAGTTTTGTGATGAGTTAATAGATGAGTCTGAATCCAAATTCAGAGAAGTAGTAGACGGGATTATGTTACTGCATATGGGCAAGAT
TGTGCAGTTTGATCTTGACGTTAGAGTAGAAGATTTAGCTTCATATACAGCTATTGATAGGTGGGTTCTTTATGTCACCAGAAATAGTGTCAAGA
AGCTACACCTTAGAATTTCTAATATTGATGATCGTAGCTATGCACTGCCTCCTTGTGTATTTCACTGTTCAACCCTGACACAGTTGAAACTTGCT
AGATGTTCCTTTAAACCACCTGAT
AAGAAAATCAAACATGAATCAAGATGGAGTAAGCGTTGCGGTTGAGGGGGACATAGAAGATAGAATTAGTGTCCTACCAAGAAATGTTATTGATT
GTATCCTTGAGCTCTTGCCTATTAAAGAAGCTGCAAAAACTTGTACATTGTCCAAAAGCTGGAGATACATTTGGAGCGAGCTTCCAAAACTGGTG
CTGTATTACGAGTTTTGTGATGAGTTAATAGATGAGTCTGAATCCAAATTCAGAGAAGTAGTAGACGGGATTATGTTACTGCATATGGGCAAGAT
TGTGCAGTTTGATCTTGACGTTAGAGTAGAAGATTTAGCTTCATATACAGCTATTGATAGGTGGGTTCTTTATGTCACCAGAAATAGTGTCAAGA
AGCTACACCTTAGAATTTCTAATATTGATGATCGTAGCTATGCACTGCCTCCTTGTGTATTTCACTGTTCAACCCTGACACAGTTGAAACTTGCT
AGATGTTCCTTTAAACCACCTGAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E249727] | SGN-U585912 | Tomato 200607 | Build 2 | 5 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T63856 [Download][View] | Facility Assigned ID: TMGIR03TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0029 | Quality Trim Threshold: 14.5 |
Working
