EST details — SGN-C26461
| Search information |
| Request: 26461 | Match: SGN-C26461 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C26461 | Clone name: cLEF-40-H5 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176327 is on microarray TOM1: SGN-S1-1-4.3.10.1
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176327 [TUS-23-K13] | Trace: SGN-T181078 | EST: SGN-E369504 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176327 [TUS-23-K13] | Trace: SGN-T181079 | EST: SGN-E369505 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E246163 | Length: 501 bp (881 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E246163 [] (trimmed)
CCGATCCTGACTATCGAGGATATGATCTCCGCCACTTCTGCCCCGTTTGCCAACTCTGATTTTAACCGTTCGATTATCCAGCGTGGCGTTGATTT
GGCTGACCTGGCATGTCTACCCGTCGCTGCTGGTTGGTATGGAAAAATCGAGGAGAAACGAAGAGTGATTAAAGTACAGTCTTTTACATTGAAGG
ACACTATCAATTTCTATATGAGACCGATTGAAGGATTAACCGTACTTCTTGATTTAGACACTCAACAAGTTATTGAAATTTTCGATGAAGGAGAG
AGTATACCAATACCAAAGGCCGCCAACACAGACTATCGCTACTCTCGTATTAAAAAAAACAAACAAAAAATAAACTTACTCAAACCAATATCAAT
CGAACAACCAAATGGTCCAAGTTTCACTATAGAAAACAATCATCTAGTTAAATGGGCAAATTGGGAATTTCACCTGAAGCCGGATCCGAGAGCCG
GGGTGATTATATCCCGGGTCATGTTT
GGCTGACCTGGCATGTCTACCCGTCGCTGCTGGTTGGTATGGAAAAATCGAGGAGAAACGAAGAGTGATTAAAGTACAGTCTTTTACATTGAAGG
ACACTATCAATTTCTATATGAGACCGATTGAAGGATTAACCGTACTTCTTGATTTAGACACTCAACAAGTTATTGAAATTTTCGATGAAGGAGAG
AGTATACCAATACCAAAGGCCGCCAACACAGACTATCGCTACTCTCGTATTAAAAAAAACAAACAAAAAATAAACTTACTCAAACCAATATCAAT
CGAACAACCAAATGGTCCAAGTTTCACTATAGAAAACAATCATCTAGTTAAATGGGCAAATTGGGAATTTCACCTGAAGCCGGATCCGAGAGCCG
GGGTGATTATATCCCGGGTCATGTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E246163] | SGN-U565031 | Tomato 200607 | Build 2 | 20 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60015 [Download][View] | Facility Assigned ID: TMGGC39TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.971 | Expected Error Rate: 0.0043 | Quality Trim Threshold: 14.5 |
Working
