EST details — SGN-C26943
| Search information |
| Request: 26943 | Match: SGN-C26943 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C26943 | Clone name: cLEF-42-A9 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176529 is on microarray TOM1: SGN-S1-1-2.3.9.18
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176529 [TUS-24-C23] | Trace: SGN-T1407 | EST: SGN-E378678 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C176529 [TUS-24-C23] | Trace: SGN-T192944 | EST: SGN-E391618 | Direction: 5' | Facility: INRA |
| Clone: SGN-C176529 [TUS-24-C23] | Trace: SGN-T193178 | EST: SGN-E391852 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247650 | Length: 616 bp (933 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247650 [] (trimmed)
CGACGCTGCCGGTTCTCCGTTTACAGAAATCTCCATTGTTTCCAAGTGATTGTTGATTCGAACAGAGCTATGGTAGGAACAAGTGCAGTAATCGA
ATCGATGGGTTCAGCTGTTAATGGAAAGGAGGTGGCGGATGTTCGATTTGATCCGACGGCTGTAGTACCGGAGCTGGTGCCTGCAGTGGTGAAAT
CGGAAGTAGATGCGGCGGTTAATGGCGGTGGCCAGGAGCAGAAGAGGGAGATAGTGTTAGGGAGGAATATACATACGTCGTCCTTTTCTGTTACG
GAACCTGATGCGGATGATGATTCTACTGGTGATAAGGAAGCGTATATGGCTAGTGTTCTAGCTCGGTATAGGAAGACTCTCACTGATCGAACTAA
GTATCATTTAGGGTATCCATATAATTTGGATTTCGATTATGGTGCACTCACACAATTGCAGCATTTCTCCATCAATAACTTAGGAGATCCATTCA
TTGAGAGCAACTACGGTGTGCACTCAAGGCAGTTTGAAGTTGGTGTTTTGGACTGGTTTGCACGCCTATGGGATATTGAAAAGGATGAATATTGG
GGATACATCACAAACTGTGGAACTGAAGGAAATCTTCATGGAATCC
ATCGATGGGTTCAGCTGTTAATGGAAAGGAGGTGGCGGATGTTCGATTTGATCCGACGGCTGTAGTACCGGAGCTGGTGCCTGCAGTGGTGAAAT
CGGAAGTAGATGCGGCGGTTAATGGCGGTGGCCAGGAGCAGAAGAGGGAGATAGTGTTAGGGAGGAATATACATACGTCGTCCTTTTCTGTTACG
GAACCTGATGCGGATGATGATTCTACTGGTGATAAGGAAGCGTATATGGCTAGTGTTCTAGCTCGGTATAGGAAGACTCTCACTGATCGAACTAA
GTATCATTTAGGGTATCCATATAATTTGGATTTCGATTATGGTGCACTCACACAATTGCAGCATTTCTCCATCAATAACTTAGGAGATCCATTCA
TTGAGAGCAACTACGGTGTGCACTCAAGGCAGTTTGAAGTTGGTGTTTTGGACTGGTTTGCACGCCTATGGGATATTGAAAAGGATGAATATTGG
GGATACATCACAAACTGTGGAACTGAAGGAAATCTTCATGGAATCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247650] | SGN-U584469 | Tomato 200607 | Build 2 | 78 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60694 [Download][View] | Facility Assigned ID: TMGGI05TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0056 | Quality Trim Threshold: 14.5 |
Working
