EST details — SGN-C26985
| Search information |
| Request: 26985 | Match: SGN-C26985 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C26985 | Clone name: cLEF-42-D12 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176555 is on microarray TOM1: SGN-S1-1-8.1.9.11
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176555 [TUS-24-E1] | Trace: SGN-T192945 | EST: SGN-E391619 | Direction: 5' | Facility: INRA |
| Clone: SGN-C176555 [TUS-24-E1] | Trace: SGN-T193179 | EST: SGN-E391853 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247616 | Length: 633 bp (998 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247616 [] (trimmed)
ATCCGGTGCTACTTTTCTGACCGGCGGTGGGTTGACGGTGACCGGAGACGGCGCGACGGTAGCGGCAGCGGCAGAGGCTCAGAGTAATAGATATG
GCGGAAGACAAGTATAATCTAAAAAATCCAGCGGTGAAGAGAATCTTACAGGAGGTTAAAGAGATGCAATCAAATCCTTCCGATGATTTCATGAG
CCTTCCTCTTGAGGAGAACATATTTGAATGGCAATTTGCAATCAGGGGTCCACGAGATTCTGAGTTTGAAGGGGGGATTTATCATGGACGAATTC
AGTTGCCAGCCGAATATCCTTTCAAGCCTCCTTCTTTCATGCTTTTGACACCAAATGGACGTTTTGAAACTCAAACCAAGATTTGTTTGAGTATT
TCTAATCATCATCCCGAGCACTGGCAACCGTCCTGGAGTGTTCGCACTGCGTTGGTAGCTCTGATCGCATTTATGCCTACCAGCCCAAATGGTGC
CCTTGGATCACTAGAATACACAAAGGAAGAAAGGCGTGTTTTAGCTATTAAATCTCGTGATGTGGCTCCAAGATATGGGACTCCTGAGCGCCAGA
AGCTGATTGACGAGATACATGAATACATGCTAAGCAAAGCACCCCCAGTTCCTCAAGCTACTA
GCGGAAGACAAGTATAATCTAAAAAATCCAGCGGTGAAGAGAATCTTACAGGAGGTTAAAGAGATGCAATCAAATCCTTCCGATGATTTCATGAG
CCTTCCTCTTGAGGAGAACATATTTGAATGGCAATTTGCAATCAGGGGTCCACGAGATTCTGAGTTTGAAGGGGGGATTTATCATGGACGAATTC
AGTTGCCAGCCGAATATCCTTTCAAGCCTCCTTCTTTCATGCTTTTGACACCAAATGGACGTTTTGAAACTCAAACCAAGATTTGTTTGAGTATT
TCTAATCATCATCCCGAGCACTGGCAACCGTCCTGGAGTGTTCGCACTGCGTTGGTAGCTCTGATCGCATTTATGCCTACCAGCCCAAATGGTGC
CCTTGGATCACTAGAATACACAAAGGAAGAAAGGCGTGTTTTAGCTATTAAATCTCGTGATGTGGCTCCAAGATATGGGACTCCTGAGCGCCAGA
AGCTGATTGACGAGATACATGAATACATGCTAAGCAAAGCACCCCCAGTTCCTCAAGCTACTA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247616] | SGN-U569768 | Tomato 200607 | Build 2 | 40 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60660 [Download][View] | Facility Assigned ID: TMGGL18TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.989 | Expected Error Rate: 0.0037 | Quality Trim Threshold: 14.5 |
Working
