EST details — SGN-E271340
| Search information |
| Request: 271340 | Match: SGN-E271340 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C64119 | Clone name: cLEM-5-C7 |
| ||
| Library Name: cLEM | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit
Development Stage: immature green fruit
Microarray: Alias clone SGN-C177846 is on microarray TOM1: SGN-S1-1-5.2.6.17
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177846 [TUS-27-J20] | Trace: SGN-T1473 | EST: SGN-E378539 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C177846 [TUS-27-J20] | Trace: SGN-T193032 | EST: SGN-E391706 | Direction: 5' | Facility: INRA |
| Clone: SGN-C177846 [TUS-27-J20] | Trace: SGN-T193281 | EST: SGN-E391955 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E271340 | Length: 494 bp (1032 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E271340 [] (trimmed)
GAGGGTTGAAGAGATCCTACTACATGGATCCCCACCCGATGAAGAATCTAGAATGGCATCTTTACGAGTATGAGATCAACCAAGTATGATGCCAT
GTGCCTTGTACCAGATTGGAACTGAAACTTGTTGATGGGAAAAAGATCCCCAAAGGTAAGATAAGCAATGTATCAGTTGCTGATCTGCAAAAGCA
AATGGGAAGACTAACTGCTGAATTTCCTTTGGACAACAAACGAACTGTGAAAGGCAGAGTGAAGGCCAATATGAAGAATATGGGAAACATTCATG
CTGCTCCGGTTCCAATTGTTCCGATTGGTGAAGGATTTGATTATGGGAATACCGACCCTTATGACTATCTTCTAGACGATCTGGATGGCTACTTC
ATAACGTAATTCTATACATTCGATGATACTCCTTTCAAATTCACCTTTGTATTATACAGCAGTTTCGTCTTGAGACTCAAAAACATCTGGTGGTA
GAAGTGTTACCCTGGCTCT
GTGCCTTGTACCAGATTGGAACTGAAACTTGTTGATGGGAAAAAGATCCCCAAAGGTAAGATAAGCAATGTATCAGTTGCTGATCTGCAAAAGCA
AATGGGAAGACTAACTGCTGAATTTCCTTTGGACAACAAACGAACTGTGAAAGGCAGAGTGAAGGCCAATATGAAGAATATGGGAAACATTCATG
CTGCTCCGGTTCCAATTGTTCCGATTGGTGAAGGATTTGATTATGGGAATACCGACCCTTATGACTATCTTCTAGACGATCTGGATGGCTACTTC
ATAACGTAATTCTATACATTCGATGATACTCCTTTCAAATTCACCTTTGTATTATACAGCAGTTTCGTCTTGAGACTCAAAAACATCTGGTGGTA
GAAGTGTTACCCTGGCTCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E271340] | SGN-U562814 | Tomato 200607 | Build 2 | 14 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T85145 [Download][View] | Facility Assigned ID: TGFAQ16TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.964 | Expected Error Rate: 0.0203 | Quality Trim Threshold: 12.5 |
Working
