EST details — SGN-C27181
| Search information |
| Request: 27181 | Match: SGN-C27181 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C27181 | Clone name: cLEF-42-M23 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176646 is on microarray TOM1: SGN-S1-1-5.4.9.19
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176646 [TUS-24-H20] | Trace: SGN-T193453 | EST: SGN-E392127 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176646 [TUS-24-H20] | Trace: SGN-T193454 | EST: SGN-E392128 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247690 | Length: 491 bp (940 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247690 [] (trimmed)
TCCTCCTCTTAAAAATTCACTCTCCCTCACTCTCAAACACTATACGCCCTTAGGCGGAAACGTTGCTTGTCCACTAGATACAAACGGATATCCTG
AGTTACGTTATGTGACAGGAGATTCTGTGTCTGTTACTTTTTTCGAGACTGATATGAATTTCAATTATCTCATTGGTGACCATCCGCGTAAGGCT
AAGGATTTTTATCACTTTGTTCCTAAGTTAGGGGAACCTAAGGATGCACCGGGGGTCCAACTAGCCCCGCTCTTAGCCATTCAGGTGACACTTTT
TCCGAATCTTGGTGTATCCATTGGTTTCACTAACCATCATGTTGTTGGTGATGGAGCTACTATAGCAGGGTTCATTAAGGCGTGGGCTCTACTCC
ACAAATTCGGTGGACATGAACAATTCTTATCGAATGAGCTAATTCCATTTTATGATAGGTCCGTAGTAAAAGACCCATATGGACAAGGGATGTCC
ATCTGGGGAAGAAATG
AGTTACGTTATGTGACAGGAGATTCTGTGTCTGTTACTTTTTTCGAGACTGATATGAATTTCAATTATCTCATTGGTGACCATCCGCGTAAGGCT
AAGGATTTTTATCACTTTGTTCCTAAGTTAGGGGAACCTAAGGATGCACCGGGGGTCCAACTAGCCCCGCTCTTAGCCATTCAGGTGACACTTTT
TCCGAATCTTGGTGTATCCATTGGTTTCACTAACCATCATGTTGTTGGTGATGGAGCTACTATAGCAGGGTTCATTAAGGCGTGGGCTCTACTCC
ACAAATTCGGTGGACATGAACAATTCTTATCGAATGAGCTAATTCCATTTTATGATAGGTCCGTAGTAAAAGACCCATATGGACAAGGGATGTCC
ATCTGGGGAAGAAATG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247690] | SGN-U571458 | Tomato 200607 | Build 2 | 25 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T60734 [Download][View] | Facility Assigned ID: TMGGI84TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0036 | Quality Trim Threshold: 14.5 |
Working
