EST details — SGN-E272310
| Search information |
| Request: 272310 | Match: SGN-E272310 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C61706 | Clone name: cLEM-19-D20 |
| ||
| Library Name: cLEM | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit
Development Stage: immature green fruit
Microarray: Alias clone SGN-C183472 is on microarray TOM1: SGN-S1-1-3.1.2.20
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183472 [TUS-42-E6] | Trace: SGN-T196014 | EST: SGN-E394688 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183472 [TUS-42-E6] | Trace: SGN-T196015 | EST: SGN-E394689 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183472 [TUS-42-E6] | Trace: SGN-T200286 | EST: SGN-E399243 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183472 [TUS-42-E6] | Trace: SGN-T200285 | EST: SGN-E399242 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E272310 | Length: 566 bp (848 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E272310 [] (trimmed)
GCACAGTTTATATGCAAATGCTCAGAACAAAGCTGAAAGTATTGGACATCTCCTATGGAAATAGCACAGCTAATACAGCTCTAGTATATCACCAT
GGGAAGCTGTTGGCACTTTCAGAGGCTGATAAACCTTATGCACTTAAAGTTCTAGAGGATGGAGATCTTCAAACACTTGGCATGCTGGATTATGA
CAAACGATTGACGCATTCCTTCACTGCCCATCCAAAAGTTGATGCTGTAACTGGTGAGATGTTTACCTTTGGATATGCTCACACCCCACCTTACA
TCACTTATAGGGTTATATCCAAGGATGGAATTATGCAGGACCCGGTCCCAATAACAATACCAGAGCCTATCATGATGCATGATTTTGCTATTACT
GAAAATTATGCAATTATGATGGATCTTCCTTTGTGTTTTCGTCCGAAGGAAATGGTGAAAAAGAATAAGCTAGCTTTTACCTTTGATGCTACTAA
AAAAGCTCGATTTGGAGTCCTTCCACGATATGCCAACAATGAGGCTCTAATCAGGTGGTTCGAGCTTCCTAATTGCTTCATTTTTCACAAT
GGGAAGCTGTTGGCACTTTCAGAGGCTGATAAACCTTATGCACTTAAAGTTCTAGAGGATGGAGATCTTCAAACACTTGGCATGCTGGATTATGA
CAAACGATTGACGCATTCCTTCACTGCCCATCCAAAAGTTGATGCTGTAACTGGTGAGATGTTTACCTTTGGATATGCTCACACCCCACCTTACA
TCACTTATAGGGTTATATCCAAGGATGGAATTATGCAGGACCCGGTCCCAATAACAATACCAGAGCCTATCATGATGCATGATTTTGCTATTACT
GAAAATTATGCAATTATGATGGATCTTCCTTTGTGTTTTCGTCCGAAGGAAATGGTGAAAAAGAATAAGCTAGCTTTTACCTTTGATGCTACTAA
AAAAGCTCGATTTGGAGTCCTTCCACGATATGCCAACAATGAGGCTCTAATCAGGTGGTTCGAGCTTCCTAATTGCTTCATTTTTCACAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E272310] | SGN-U570695 | Tomato 200607 | Build 2 | 13 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T86308 [Download][View] | Facility Assigned ID: TGFCX22TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0090 | Quality Trim Threshold: 14.5 |
Working
