EST details — SGN-E273652
| Search information |
| Request: 273652 | Match: SGN-E273652 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C68486 | Clone name: cLEN-6-J11 |
| ||
| Library Name: cLEN | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: red ripe to over-ripe
Microarray: Alias clone SGN-C183612 is on microarray TOM1: SGN-S1-1-7.3.2.21
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C183612 [TUS-42-K2] | Trace: SGN-T195043 | EST: SGN-E393717 | Direction: 3' | Facility: INRA |
| Clone: SGN-C183612 [TUS-42-K2] | Trace: SGN-T195044 | EST: SGN-E393718 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183612 [TUS-42-K2] | Trace: SGN-T200459 | EST: SGN-E399579 | Direction: 5' | Facility: INRA |
| Clone: SGN-C183612 [TUS-42-K2] | Trace: SGN-T200311 | EST: SGN-E399285 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E273652 | Length: 554 bp (823 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E273652 [] (trimmed)
GAAAGTTCTATCCTTGCAGGACGTATAATTTCCCTTTTCTCTTCTTCTCCCCTTAACGTGAGCCGATTCGCTAACCTGCACCATGAGCTTACTTG
ACAAGCTCTGGGACGACACCGTTGCCGGTCCCCGGCCAGATAGTGGCCTCGGGAAGCTCCGGAAGTATTCTACTTTTAGTCAGCGTTCAAATTCC
GGCAAGGAATCAGAAGTTTCAACACCGAGATCCTTTACTGAGGAAGCAAGTGAGGACGCGGTGAAGGTGACGAGAAGTATCATGATCGTAAAGCC
TTCCGGGAGTCAGAATAGAGATTCACCTCCCGTTTCTCCGGCCGGTACTACTCCTCCGGTATCTCCTTTTTCTGGTTCTTCTGGAAGAGAAGCAT
TTCGGTTCCGTCGGCGATCAGCGTCATTTGCATACGAGAATGCCAGTGGGGTTGGACCCAGAAGCCCTCGTCCTCCTTACGACCTGTGAGATATA
GTCGGGTTCTCCTTTTTTGTTTTCCTTCTTGAGGCGGCTGAATGTAGTATAGCTTAGTCGACATTACTCAACATGTTCC
ACAAGCTCTGGGACGACACCGTTGCCGGTCCCCGGCCAGATAGTGGCCTCGGGAAGCTCCGGAAGTATTCTACTTTTAGTCAGCGTTCAAATTCC
GGCAAGGAATCAGAAGTTTCAACACCGAGATCCTTTACTGAGGAAGCAAGTGAGGACGCGGTGAAGGTGACGAGAAGTATCATGATCGTAAAGCC
TTCCGGGAGTCAGAATAGAGATTCACCTCCCGTTTCTCCGGCCGGTACTACTCCTCCGGTATCTCCTTTTTCTGGTTCTTCTGGAAGAGAAGCAT
TTCGGTTCCGTCGGCGATCAGCGTCATTTGCATACGAGAATGCCAGTGGGGTTGGACCCAGAAGCCCTCGTCCTCCTTACGACCTGTGAGATATA
GTCGGGTTCTCCTTTTTTGTTTTCCTTCTTGAGGCGGCTGAATGTAGTATAGCTTAGTCGACATTACTCAACATGTTCC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E273652] | SGN-U582094 | Tomato 200607 | Build 2 | 58 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T88348 [Download][View] | Facility Assigned ID: TRRAW54TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.974 | Expected Error Rate: 0.0074 | Quality Trim Threshold: 14.5 |
Working
