EST details — SGN-C28009
| Search information |
| Request: 28009 | Match: SGN-C28009 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C28009 | Clone name: cLEF-46-E22 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180655 is on microarray TOM1: SGN-S1-1-4.3.19.15
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180655 [TUS-34-O21] | Trace: SGN-T193526 | EST: SGN-E392200 | Direction: 5' | Facility: INRA |
| Clone: SGN-C180655 [TUS-34-O21] | Trace: SGN-T193742 | EST: SGN-E392416 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E247291 | Length: 563 bp (1007 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E247291 [] (trimmed)
ATGAGGTGTATAACTCACTCGTTTCATTTCACATGTTATAGATAAATTCACCAATTTTCACGTCCACGTGATAAGTAAAGAAAGAGAGTTACAAA
AATGGAGGCTTGCACTGCATTCATTCCCTATCAACCTGTCTGCTAACTACTATAGAAAAATTAGAGGAGAAAAAAGAAGATATTCTCCTAAAAGT
GCTTACCAGGAACAAATAAGGATATGCTGATGGGTGACGTAAAGTTAAGCCCCACCAGCCATGTCCATATCTGTAACTCCTACCATTCCCTTGAA
AACAACACGTAATTTCCTAGAACATGACTGCTTTTTATCTCCTTTTCCTGCTGCACCAGTAACATGAACAATGTCCCTTGGAGTTTTACCCATAA
GCTCAAACAATGGTAAATCCAAATTAGACCGGGTCATTTCTTCCAGTATCGGAGGTGCTTGCATGTATAGATTCTTCCCTCGATACGTCACACTT
ACTCTAATTAGTAGTAGCTTAGGGTGATCTTCAAGGAGATCAATGAACTTTTTAAGAGTAACTGAAGCTTCTAGCTCAATAAGAACAC
AATGGAGGCTTGCACTGCATTCATTCCCTATCAACCTGTCTGCTAACTACTATAGAAAAATTAGAGGAGAAAAAAGAAGATATTCTCCTAAAAGT
GCTTACCAGGAACAAATAAGGATATGCTGATGGGTGACGTAAAGTTAAGCCCCACCAGCCATGTCCATATCTGTAACTCCTACCATTCCCTTGAA
AACAACACGTAATTTCCTAGAACATGACTGCTTTTTATCTCCTTTTCCTGCTGCACCAGTAACATGAACAATGTCCCTTGGAGTTTTACCCATAA
GCTCAAACAATGGTAAATCCAAATTAGACCGGGTCATTTCTTCCAGTATCGGAGGTGCTTGCATGTATAGATTCTTCCCTCGATACGTCACACTT
ACTCTAATTAGTAGTAGCTTAGGGTGATCTTCAAGGAGATCAATGAACTTTTTAAGAGTAACTGAAGCTTCTAGCTCAATAAGAACAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E247291] | SGN-U570793 | Tomato 200607 | Build 2 | 23 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T61702 [Download][View] | Facility Assigned ID: TMGGZ35TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.968 | Expected Error Rate: 0.0021 | Quality Trim Threshold: 14.5 |
Working
