EST details — SGN-E280281
| Search information |
| Request: 280281 | Match: SGN-E280281 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C72149 | Clone name: cLER-1-E9 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178514 is on microarray TOM1: SGN-S1-1-1.2.4.18
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C72149 [cLER-1-E9] | Trace: SGN-T91836 | EST: SGN-E280282 | Direction: 3' | Facility: TIGR |
| Clone: SGN-C178514 [TUS-29-F16] | Trace: SGN-T1495 | EST: SGN-E378394 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C178514 [TUS-29-F16] | Trace: SGN-T184193 | EST: SGN-E371426 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178514 [TUS-29-F16] | Trace: SGN-T184194 | EST: SGN-E371427 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280281 | Length: 459 bp (864 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E280281 [] (trimmed)
TTTTTTTCGCATACAAGATAAGCAAAGCCCCTGAATCGAAGACTGTTATTTAAAGTAAGTGTCTTCCCCAGCCAAGAAAATGGCTTAATTCAGTT
TTAGAAACATAGAGATTCACATGCATTGGAAGTCATATGACATATCTTCCCTCACTTTTTAACATTTCTCTACAAATCATAAAGCTCATTGCAAT
AGAGAAGTTATCAACTAGTTGATAACAGAAAGAGTTGGCAATAACAGATAGAAGGCCAACTAATAACAAAGCCTTCATGCTGATGAGAACAGCAG
TCGGCTTAGTAGTGTTGTGACCAGTTAGCAGCACTACCCACTCTGGGCATGCCTGAATCCACTTTCTTAGACTCTGGGTCCACCTTAAAATTTGC
TCCACACACCTCGCCTGAGCTGTCCACCCTCGGTACTGATTTCAACTCATTGCGTGCTCGAGTTTTTTTTTTTTTTTTT
TTAGAAACATAGAGATTCACATGCATTGGAAGTCATATGACATATCTTCCCTCACTTTTTAACATTTCTCTACAAATCATAAAGCTCATTGCAAT
AGAGAAGTTATCAACTAGTTGATAACAGAAAGAGTTGGCAATAACAGATAGAAGGCCAACTAATAACAAAGCCTTCATGCTGATGAGAACAGCAG
TCGGCTTAGTAGTGTTGTGACCAGTTAGCAGCACTACCCACTCTGGGCATGCCTGAATCCACTTTCTTAGACTCTGGGTCCACCTTAAAATTTGC
TCCACACACCTCGCCTGAGCTGTCCACCCTCGGTACTGATTTCAACTCATTGCGTGCTCGAGTTTTTTTTTTTTTTTTT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280281] | SGN-U577782 | Tomato 200607 | Build 2 | 6 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T91835 [Download][View] | Facility Assigned ID: TPRAA29TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.969 | Expected Error Rate: 0.0181 | Quality Trim Threshold: 14.5 |
Working
