EST details — SGN-E280336
| Search information |
| Request: 280336 | Match: SGN-E280336 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C72356 | Clone name: cLER-1-O5 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178676 is on microarray TOM1: SGN-S1-1-7.1.4.20
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C72356 [cLER-1-O5] | Trace: SGN-T91889 | EST: SGN-E280335 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C178676 [TUS-29-M10] | Trace: SGN-T184012 | EST: SGN-E371683 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178676 [TUS-29-M10] | Trace: SGN-T184013 | EST: SGN-E371684 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280336 | Length: 452 bp (823 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E280336 [] (trimmed)
ATCAATCTTCCACACATCTTTCTTGTCAACTAAGGAACAGTACAAGAATCAACTGTTTTGCATTTTCCTTTAGTAGCAAACACTTGAAGTTATAC
TATTTATTTGTATACCTTCAATCAAGCAGGTGCAATAGAAACTTTTTCAACTTCAACAACATACTCAAGAGTAGCAGAGGGAGGAATTTGCAGCC
CTGTTCCTAAATCTGCTCCTTTTTCTCCAAATCCCAAATTTGGAGGAATTATCACTCTTCTTTTTCCACCTGCCTTCATACTTTATAGTACTGAC
TGTATACCTTAACAAATTCCTTTACTATAAGGGGTTGATCCCATATACTAATGCCAATGGCCTTTTCTTCATTCCATCACCACCAAATGTATCCA
CAAAAACTGCTCCACTGGCTTGTATGCTTCCCTTCACATCTATCACAACTAAGTCCCCTGGCCTTGCTGTTG
TATTTATTTGTATACCTTCAATCAAGCAGGTGCAATAGAAACTTTTTCAACTTCAACAACATACTCAAGAGTAGCAGAGGGAGGAATTTGCAGCC
CTGTTCCTAAATCTGCTCCTTTTTCTCCAAATCCCAAATTTGGAGGAATTATCACTCTTCTTTTTCCACCTGCCTTCATACTTTATAGTACTGAC
TGTATACCTTAACAAATTCCTTTACTATAAGGGGTTGATCCCATATACTAATGCCAATGGCCTTTTCTTCATTCCATCACCACCAAATGTATCCA
CAAAAACTGCTCCACTGGCTTGTATGCTTCCCTTCACATCTATCACAACTAAGTCCCCTGGCCTTGCTGTTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280336] | SGN-U577137 | Tomato 200607 | Build 2 | 19 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T91890 [Download][View] | Facility Assigned ID: TPRAA87TV |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.922 | Expected Error Rate: 0.0309 | Quality Trim Threshold: 12.5 |
Working
