EST details — SGN-E280350
| Search information |
| Request: 280350 | Match: SGN-E280350 |
| Request From: SGN database generated link | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C72087 | Clone name: cLER-1-C12 |
| ||
| Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178456 is on microarray TOM1: SGN-S1-1-3.4.4.13
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C178456 [TUS-29-D6] | Trace: SGN-T184180 | EST: SGN-E371413 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178456 [TUS-29-D6] | Trace: SGN-T184181 | EST: SGN-E371414 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E280350 | Length: 622 bp (952 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E280350 [] (trimmed)
CTTTGATGCTACGTCCCGACTTCCCAGAAGCAACTTGTAATCTTCTTCACACGTTACAGTGTGTCTGTGATTGGGATGATCGAGAGAAGATGTTT
ATTGAAGTTGAGGGGATCCTGAGAAGACAGATTAAGATGTCAGTTATCCCAAGTGTACAGCCTTTTCATGCAATTGCTTACCCTCTCGATCCACT
GCTAGCTCTAGAAATCAGTTGTAAGTATGCCCAGCACTGCTCTGTAATGGCAGCTCGTTTTTCACTTCCTCCTTTCAGTCATCCTCCTCCATTGC
CAATAAAGGGTGGTAGCCGGAGTGGTCGGCTTAGGGTTGGATATGTGAGTAGTGATTTTGGCAACCACCCACTATCACATCTAATGGGTTCAGTC
TTTGGCATGCACGATAGAGAAAATGTTGAGGTGTTCTGCTACGCTTTGAGTCCAAATGATGGCACTGAGTGGAGGCTCCGCATTCAGTCAGAAGC
AGAGCATTTTGTTGATGTATCGTCCTTGGCATCTGATGTGATAGCTAGGATGATTAATGAGGATCAAATACAGATCCTAATCAATCTTAACGGTT
ATACTAAGGGGGCCCGAAATGAGATCTTTGCAATGCAGCCTGCTCCTATCCA
ATTGAAGTTGAGGGGATCCTGAGAAGACAGATTAAGATGTCAGTTATCCCAAGTGTACAGCCTTTTCATGCAATTGCTTACCCTCTCGATCCACT
GCTAGCTCTAGAAATCAGTTGTAAGTATGCCCAGCACTGCTCTGTAATGGCAGCTCGTTTTTCACTTCCTCCTTTCAGTCATCCTCCTCCATTGC
CAATAAAGGGTGGTAGCCGGAGTGGTCGGCTTAGGGTTGGATATGTGAGTAGTGATTTTGGCAACCACCCACTATCACATCTAATGGGTTCAGTC
TTTGGCATGCACGATAGAGAAAATGTTGAGGTGTTCTGCTACGCTTTGAGTCCAAATGATGGCACTGAGTGGAGGCTCCGCATTCAGTCAGAAGC
AGAGCATTTTGTTGATGTATCGTCCTTGGCATCTGATGTGATAGCTAGGATGATTAATGAGGATCAAATACAGATCCTAATCAATCTTAACGGTT
ATACTAAGGGGGCCCGAAATGAGATCTTTGCAATGCAGCCTGCTCCTATCCA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E280350] | SGN-U581310 | Tomato 200607 | Build 2 | 35 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T91904 [Download][View] | Facility Assigned ID: TPRAB18TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.978 | Expected Error Rate: 0.0049 | Quality Trim Threshold: 14.5 |
Working
