EST details — SGN-E280596
Search information |
Request: 280596 | Match: SGN-E280596 |
Request From: SGN database generated link | Match Type: EST sequence internal identifier |
Clone information |
SGN ID: SGN-C72160 | Clone name: cLER-1-F21 |
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Library Name: cLER | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: leaf
Development Stage: 4 weeks
Microarray: Alias clone SGN-C178522 is on microarray TOM1: SGN-S1-1-1.2.3.1
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing |
Clone: SGN-C178522 [TUS-29-F24] | Trace: SGN-T184270 | EST: SGN-E371503 | Direction: 3' | Facility: INRA |
Clone: SGN-C178522 [TUS-29-F24] | Trace: SGN-T184271 | EST: SGN-E371504 | Direction: 5' | Facility: INRA |
Sequence |
Sequence Id: SGN-E280596 | Length: 411 bp (732 bp untrimmed) |
Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E280596 [] (trimmed)
AAAAAGGGGTAAAATTATGGCTGCCTCTCTACAAGCAGCTGCTACTCTTATGCAACCGACAAAGGTTGGTGTTAGAAACAACCTGCAGTTGAGGT
CTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTTTGCAAACTGAAATCAAGGAATTGGCTCAGAAA
TGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCTCGGGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAAC
CTATGATGAAATCCAAAGTAAGACATATATGGAAGTAAAGGGAACTGGAACTGCTAACCAATGTCCTACCATTGAAGGAGGTGTTGGCAGCTTTG
CCTTCAAACCAGGCAAATACACTGGCAAGAA
CTGCTCAAAGTGTGAGCAAAGCATTTGGTGTTGAACAAGGTTCAGGCAGGCTTACTTGCTCTTTGCAAACTGAAATCAAGGAATTGGCTCAGAAA
TGTACTGATGCTGCCAAGATTGCTGGTTTTGCTCTTGCCACCTCTGCCCTCGTCGTCTCGGGAGCAAATGCGGAAGGAGTTCCAAAACGTTTAAC
CTATGATGAAATCCAAAGTAAGACATATATGGAAGTAAAGGGAACTGGAACTGCTAACCAATGTCCTACCATTGAAGGAGGTGTTGGCAGCTTTG
CCTTCAAACCAGGCAAATACACTGGCAAGAA
Unigenes |
Current Unigene builds | |||||
[SGN-E280596] | SGN-U580023 | Tomato 200607 | Build 2 | 214 ESTs assembled | |
Follow SGN-U# link for detailed information and annotations |
Chromatogram |
SGN-ID: SGN-T92150 [Download][View] | Facility Assigned ID: TPRAC35TH |
Submitter: Koni | Sequencing Facility: TIGR |
Quality processing |
Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
Sequence Entropy: 0.960 | Expected Error Rate: 0.0030 | Quality Trim Threshold: 14.5 |