EST details — SGN-C28753
| Search information |
| Request: 28753 | Match: SGN-C28753 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C28753 | Clone name: cLEF-49-B9 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C176963 is on microarray TOM1: SGN-S1-1-8.2.8.2
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C176963 [TUS-25-F1] | Trace: SGN-T1431 | EST: SGN-E378684 | Direction: 5' | Facility: Giov. Lab |
| Clone: SGN-C176963 [TUS-25-F1] | Trace: SGN-T181887 | EST: SGN-E368934 | Direction: 3' | Facility: INRA |
| Clone: SGN-C176963 [TUS-25-F1] | Trace: SGN-T181888 | EST: SGN-E368935 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E249067 | Length: 594 bp (910 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E249067 [] (trimmed)
TAGGCTTTGTGGAGCTTACAGGTATTCCTGTGGCGAGTACTGTGATGGGTCTTGGAGCTTTTCCAAGTGGGGATGAGCTTTCTCTTCAAATGTTG
GGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAA
ATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTG
CAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTA
ACGGAGCAGAAAGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAAGTTCTTGATGAGTTAACTAA
CGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTG
GTGGATTAGGAGCAATGGGATTTG
GGTATGCATGGGACTGTGTATGCTAATTATGCGGTGGATAGTAGTGATTTGTTGCTTGCATTTGGGGTGAGGTTTGATGATCGAGTTACTGGTAA
ATTGGAAGCTTTTGCTAGCCGAGCTAAGATTGTCCATATTGATATTGATTCGGCTGAGATTGGAAAGAACAAGCAACCTCATGTTTCCATCTGTG
CAGATATCAAGTTGGCATTACAGGGTTTGAATTCCATATTCGAGAGTAAAAAAGGTAAGCTGAAGTTGGACTTTTCTGCTTGGAGGCAGGAGTTA
ACGGAGCAGAAAGTGAAGTACCCATTGAATTTTAAGACTTTCGGTGAAGCCATCCCTCCCCAATATGCTATTCAAGTTCTTGATGAGTTAACTAA
CGGAAATGCCATCATTAGTACTGGTGTGGGGCAACACCAAATGTGGGCTGCCCAACACTACAAGTACAAAAAGCCACGCCAATGGCTTACATCTG
GTGGATTAGGAGCAATGGGATTTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E249067] | SGN-U572742 | Tomato 200607 | Build 2 | 63 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T62575 [Download][View] | Facility Assigned ID: TMGHM05TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.967 | Expected Error Rate: 0.0129 | Quality Trim Threshold: 14.5 |
Working
