EST details — SGN-C28889
| Search information |
| Request: 28889 | Match: SGN-C28889 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C28889 | Clone name: cLEF-49-I19 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177042 is on microarray TOM1: SGN-S1-1-1.1.8.3
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177042 [TUS-25-I8] | Trace: SGN-T181754 | EST: SGN-E369262 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177042 [TUS-25-I8] | Trace: SGN-T181755 | EST: SGN-E369263 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E249002 | Length: 552 bp (863 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E249002 [] (trimmed)
AGACAACCCAATCTCCGCCTCCGGCCACACTGTTAATTTATCGTCCTAAGGTTTTCAGTCGCCGGAAAAGAAATTCGATTTTCCGACGAATCTAT
CGAGGTGATTGAGGATTTGGATGAGAATACAAGATGCCGCCAAAGCAATCTAAAGCCGATATTGCAAAGAAGCAGAAGGTAGTTGAAGACAAGAC
GTTCGGCTGATATACTACTAACTAGTCGCACAATGTTCAGAAATATGTTCAGTCTATACAGCAAAATGTTGCGCCTAAAGCTGATCCTAAGAAAC
TTGACGCCAAGAAAAAGAAGGAAGAAGAGAAAGCTAGAGAGAAAGAGCTTAGCGAATTGTTCAAAGTCGCTATTAGCCAACCTAAAGTGCCTCTA
GGTGTTGATCCAAAATCTATTTTATGTGAGTTCTTTAAGGCGGGGCAATGTGTTAAGGGTTTTAAGTGCAAGTTCTCTCACGATCTGAATGTTCA
GCGAAAAGGAGAGAAGATTGATATTTTCAACGATAAGCGTGATGAAGATGGAAAGGAAACAATGGACGATTGGGATC
CGAGGTGATTGAGGATTTGGATGAGAATACAAGATGCCGCCAAAGCAATCTAAAGCCGATATTGCAAAGAAGCAGAAGGTAGTTGAAGACAAGAC
GTTCGGCTGATATACTACTAACTAGTCGCACAATGTTCAGAAATATGTTCAGTCTATACAGCAAAATGTTGCGCCTAAAGCTGATCCTAAGAAAC
TTGACGCCAAGAAAAAGAAGGAAGAAGAGAAAGCTAGAGAGAAAGAGCTTAGCGAATTGTTCAAAGTCGCTATTAGCCAACCTAAAGTGCCTCTA
GGTGTTGATCCAAAATCTATTTTATGTGAGTTCTTTAAGGCGGGGCAATGTGTTAAGGGTTTTAAGTGCAAGTTCTCTCACGATCTGAATGTTCA
GCGAAAAGGAGAGAAGATTGATATTTTCAACGATAAGCGTGATGAAGATGGAAAGGAAACAATGGACGATTGGGATC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E249002] | SGN-U579706 | Tomato 200607 | Build 2 | 21 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T62510 [Download][View] | Facility Assigned ID: TMGHK58TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.966 | Expected Error Rate: 0.0214 | Quality Trim Threshold: 14.5 |
Working
