EST details — SGN-C28939
| Search information |
| Request: 28939 | Match: SGN-C28939 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C28939 | Clone name: cLEF-49-K3 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C177073 is on microarray TOM1: SGN-S1-1-2.2.8.7
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C177073 [TUS-25-J15] | Trace: SGN-T181990 | EST: SGN-E369037 | Direction: 3' | Facility: INRA |
| Clone: SGN-C177073 [TUS-25-J15] | Trace: SGN-T181991 | EST: SGN-E369038 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E248843 | Length: 509 bp (848 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E248843 [] (trimmed)
GCCGTGTTGAAAGAAAAGAAAAAAAAACAAAGCCCACGCGAAAGAACAAGGAACCACAATAAGAGGGGCTCTCCCTCTACCATTTGGACTCATTC
GTTTTGATCGCATCTCCTTCTCTCTCTCCCATAAAACCATTTATTAGGTGTTAAGCTACTACTAAAACATTAAAAAAAGAAGAAGATGAGTTTCT
TAAGTGGAAACATGGTCATGTTGGTGTTCTTAATGGGTTAAGGGTTGGCTTCTTCTTCTCCAACATAAAAGAAGAAAGATTCATTCTTTTCTCTC
TATCAAGAATCAAATAAAGTCTTTGAATACTTGTTGGTATTTCCATAGTTTGGGGCATCTTCTTCTCATTCATGCTGTTTCTGTGTTTGCCTTAA
TTAGGCCTTCCCTTCCTCCCCACTCTCTTTTACCAATCAAAATCCCTTACTTCTATATATATACACACACACAGCTTACTTGTGTTTGATCATTC
TTCAATGGCTGTTCAAGCTCAATACCCATCTAAT
GTTTTGATCGCATCTCCTTCTCTCTCTCCCATAAAACCATTTATTAGGTGTTAAGCTACTACTAAAACATTAAAAAAAGAAGAAGATGAGTTTCT
TAAGTGGAAACATGGTCATGTTGGTGTTCTTAATGGGTTAAGGGTTGGCTTCTTCTTCTCCAACATAAAAGAAGAAAGATTCATTCTTTTCTCTC
TATCAAGAATCAAATAAAGTCTTTGAATACTTGTTGGTATTTCCATAGTTTGGGGCATCTTCTTCTCATTCATGCTGTTTCTGTGTTTGCCTTAA
TTAGGCCTTCCCTTCCTCCCCACTCTCTTTTACCAATCAAAATCCCTTACTTCTATATATATACACACACACAGCTTACTTGTGTTTGATCATTC
TTCAATGGCTGTTCAAGCTCAATACCCATCTAAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E248843] | SGN-U574419 | Tomato 200607 | Build 2 | 44 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T62351 [Download][View] | Facility Assigned ID: TMGHK62TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.943 | Expected Error Rate: 0.0042 | Quality Trim Threshold: 14.5 |
Working
