EST details — SGN-C30208
| Search information |
| Request: 30208 | Match: SGN-C30208 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C30208 | Clone name: cLEF-56-N20 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180464 is on microarray TOM1: SGN-S1-1-3.3.19.13
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180464 [TUS-34-G22] | Trace: SGN-T196292 | EST: SGN-E394966 | Direction: 3' | Facility: INRA |
| Clone: SGN-C180464 [TUS-34-G22] | Trace: SGN-T196293 | EST: SGN-E394967 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E249579 | Length: 632 bp (881 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E249579 [] (trimmed)
AAAGGTGGGAAAGAATCAAGAATGGATGTGCTGGGTATGGAAAATCTTCTTTTTAAGCGCAACATCACTAGACTGTATGACCTCAAAGGGTCGTC
TCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGG
GAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGTCAATAGATGTGATGGATTACTCATTACTAGTTGGG
GTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTC
AGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTC
TGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCC
TTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAAGAATGTTGGGTAGTTGCTTTATCATT
TCGATCACGCTATAATCCAGATTCAAGTGGAAGTAACAAAGTTTTACTTGATCAGAACTTGATTGAAGCAATGCCAACTTCTCCGATTTTTGTGG
GAACGCAAGCTAAGCGGCTGCTGCAGAGAGCTGTGTGGAATGATACTTCATTTCTAGCGTCAATAGATGTGATGGATTACTCATTACTAGTTGGG
GTGGATGAGAAGAAGCAGGAACTGGTGCTTGGTATTATTGATTTCATGAGACAGTATACGTGGGACAAGCATCTCGAGACTTGGGTAAAGGCTTC
AGGTATTCTAGGTGGGCCGAAGAATGCAGCCCCAACGGTGATTTCTCCAAAGCAATACAAAATAAGATTCAGGAAAGCAATGTCTACATACTTTC
TGATGGTGCCAGATGAGTGGCCTACATGAAGTGATACCCCAAGTATCAGTGCAGAAAAATTGCCCCGGCCGGTCTTGGTATAATTTTATCCATCC
TTTCTTATGCCATCAAGTTTTGTGTATTTTGTGCAAGAATGTTGGGTAGTTGCTTTATCATT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E249579] | SGN-U568780 | Tomato 200607 | Build 2 | 28 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T63708 [Download][View] | Facility Assigned ID: TMGIP82TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.982 | Expected Error Rate: 0.0037 | Quality Trim Threshold: 14.5 |
Working
