EST details — SGN-C30282
| Search information |
| Request: 30282 | Match: SGN-C30282 |
| Request From: SGN database generated link | Match Type: cDNA clone internal identifier |
| Clone information |
| SGN ID: SGN-C30282 | Clone name: cLEF-57-C6 |
| ||
| Library Name: cLEF | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: fruit pericarp
Development Stage: mature green
Microarray: Alias clone SGN-C180492 is on microarray TOM1: SGN-S1-1-7.1.19.6
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C180492 [TUS-34-I2] | Trace: SGN-T196295 | EST: SGN-E394969 | Direction: 3' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E249732 | Length: 677 bp (921 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E249732 [] (trimmed)
CAGGGATGGAAACTAACAAATGGGAAGGGAAGAGAAGCATTACTGAAGCTGAAAAGGAAGAGGATGAACATGGAAGTGTTGAAGAGGATAGCAAA
AGAAAAAGGGTATTGACTCTCTCTGGTAGGAAGCTAGTTGGTGAAGGGTCGGCACATCCTTCTTGCCAGGTCGATCAGTGCACTGCAGATATGGC
AGATGCCAAGCCATACCATCGCCGCCACAAGGTGTGTGAGTTCCATTCAAAGTCTCCAATAGTACTTATTAGTGGACTCCAGAAGCGATTCTGTC
AGCAATGTAGCAGATTTCATCTGTTAGCAGAGTTTGATGATGCTAAGAGGAGTTGCCGAAAGCGTTTGGCAGGTCACAATGAGCGCCGCCGTAAA
ATTACATATGACTCTCATGGAGAAAATTTGGGCTGAAGAAGCATCAGCATCAATGGCAGCCAAATAACCTACTTTCTGAAGCAACATAAACAAGA
TGTGGGTTAAGCATGCTCTCTATCTTCTGTCAATTCCCGGATTTCTAAGCAAATTGTTATTTGTGACCTTCAAGTATCTAGCTAATAGTACTTTC
ATTTCCCTTGTGTNAAGGGAAGGACAAAAAGAATAAGCCGTTGGCACTGTCTGCTAGTATTCGAAAAATGAAATATTTGTAGTATGAATGCATAT
CCATGTTGACAT
AGAAAAAGGGTATTGACTCTCTCTGGTAGGAAGCTAGTTGGTGAAGGGTCGGCACATCCTTCTTGCCAGGTCGATCAGTGCACTGCAGATATGGC
AGATGCCAAGCCATACCATCGCCGCCACAAGGTGTGTGAGTTCCATTCAAAGTCTCCAATAGTACTTATTAGTGGACTCCAGAAGCGATTCTGTC
AGCAATGTAGCAGATTTCATCTGTTAGCAGAGTTTGATGATGCTAAGAGGAGTTGCCGAAAGCGTTTGGCAGGTCACAATGAGCGCCGCCGTAAA
ATTACATATGACTCTCATGGAGAAAATTTGGGCTGAAGAAGCATCAGCATCAATGGCAGCCAAATAACCTACTTTCTGAAGCAACATAAACAAGA
TGTGGGTTAAGCATGCTCTCTATCTTCTGTCAATTCCCGGATTTCTAAGCAAATTGTTATTTGTGACCTTCAAGTATCTAGCTAATAGTACTTTC
ATTTCCCTTGTGTNAAGGGAAGGACAAAAAGAATAAGCCGTTGGCACTGTCTGCTAGTATTCGAAAAATGAAATATTTGTAGTATGAATGCATAT
CCATGTTGACAT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E249732] | SGN-U576709 | Tomato 200607 | Build 2 | 8 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T63861 [Download][View] | Facility Assigned ID: TMGIR15TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.981 | Expected Error Rate: 0.0095 | Quality Trim Threshold: 12.5 |
Working
