Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E371030

Search information 
Request: 371030Match: SGN-E371030
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C178753Clone name: TUS-29-P15
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178753 is on microarray TOM1 spot ID 1-1-2.4.4.20 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C70615 [cLER-15-G15] Trace: SGN-T95295 EST: SGN-E282775 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E371030Length: 376 bp (885 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E371030 [] (trimmed) AACATATAACCACCGACTCAATACAATTAATTGCTCATAACTTGGGAGCAACCAAAGAAAATACACCGGTACAAATAGGAACAATATGCTCAACA
AATATTGAAGACAAAATATTAATGACGTATATAGTACAAATCATACAACACTTTTTGATTATATGTTTGGAAATTTAGAATCCTTCTGGCTTGTA
GGCACTGAAGCTGATGCACTGGACTTGACTAACTTTGGCGAATCCTGATATTACGAACCCAGGCTTGTGGGTACGCCTTCTTCGCCTCTTGAACC
TCAACCAACACCTGTGTTGCATCAGTGCACCCAAACATAGGTAACTTCCACATGGTCCACTATCTACCATTTTATTATCCAGGGGAACCTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E371030] SGN-U580970 Tomato 200607 Build 2 2 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T184099 [Download][View] Facility Assigned ID: FA0AAD17CH08FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.949 Expected Error Rate: 0.0349 Quality Trim Threshold: 12.5