EST details — SGN-E371613

Search information 
Request: 371613Match: SGN-E371613
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C178674Clone name: TUS-29-M8
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178674 is on microarray TOM1 spot ID 1-1-1.1.4.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C72354 [cLER-1-O3] Trace: SGN-T91887 EST: SGN-E280333 Direction: 5' Facility: TIGR
Clone: SGN-C72354 [cLER-1-O3] Trace: SGN-T91888 EST: SGN-E280334 Direction: 3' Facility: TIGR
Clone: SGN-C178674 [TUS-29-M8] Trace: SGN-T183941 EST: SGN-E371612 Direction: 3' Facility: INRA
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Sequence 
Sequence Id: SGN-E371613Length: 593 bp (900 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E371613 [] (trimmed) AATATGAAGTACAATCCAAGAGTATCCTCCTCTCGCCGGAAGAGCAGGAAGGCTCATTTCACGGCGCCTTCAAGTGCGCGCCGGATTTTAATGAG
CGCACCCTTATCGTCCGAGTTACGTGTAAAGTACAACGTAAGATCTATGCCGGTGAGGAAAGATGACGAAGTTCAGGTTGTTCGTGGAACTTACA
AGGGCCGTGACGGGAAAGTTGTCCAAGTGTACCGTAAGAAATGGGTGATCCACATTGAACGTATAACCAGAGAGAAGGTCAATGGATCTACTGTG
AACGTTGGTATTCATCCTTCGAAGGTTGTTGTTACAAAGCTAAGGCTTGACAAAGACAGGAGATCACTACTCGACCGCAAGGCTAAGGGACGAGC
TGCTGCTGACAAGGACAAGGGCACTAAGTTCACTTCTGAGGATATCATGCAGAAAATCGATTGATTTTTCACTCATTTTGTCTGGTATTGCTATT
TTAGCTAAAGAGAATTTATATCAGTCCGTTTCAGTTCATTAGTGACATTTAATTTTGTTGAAGTTTCTGTTTTTGCTTAAATCAATGATGATGAT
ACTTCAGAACTCCNCACAAAAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E371613] SGN-U579485 Tomato 200607 Build 2 53 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T183942 [Download][View] Facility Assigned ID: FA0AAD17BG04RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.983 Expected Error Rate: 0.0006 Quality Trim Threshold: 12.5