Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

EST details — SGN-E371701

Search information 
Request: 371701Match: SGN-E371701
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C178380Clone name: TUS-29-A2
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C178380 is on microarray TOM1 spot ID 1-1-7.1.4.13 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C65273 [cLEM-8-N15] Trace: SGN-T85417 EST: SGN-E271866 Direction: 5' Facility: TIGR
Clone: SGN-C178380 [TUS-29-A2] Trace: SGN-T1485 EST: SGN-E378391 Direction: 5' Facility: Giov. Lab
Clone: SGN-C178380 [TUS-29-A2] Trace: SGN-T183957 EST: SGN-E371628 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E371701Length: 479 bp (882 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E371701 [] (trimmed) ATAAGTTGGGTAGTATTTAGCTAATGGAACCGAGAAAATGTAGATACAGTTTATAGTTAAATTTATTTAATTTTACACAAAGCAAACATTAAACC
GTTGCCAGTTTCAAAGTCACAACTTATCTATCATCAGCCAAATGCAGTAAGGGGAGTTGAGCCAAAACTAATACAACCGGAGGACATTGACTAGA
CGATTAATTTAAGGTACAGTGAAGGCAACCTTTGTAGGCATTAAGCTGCGACAAGTTAAGCAACTGGAGGACGGAGGACGTGGTCCTGTGAAGTA
TCAACAGCAGCAGGAGGCATGAATTGCCACATTGCGACACCAGGGTAACTCATGATTGGCACCAGCTTGCTTCCTGGAAATTGACCATGAGCAGC
AAATGCAGAAGGTATAGCAGGAGGCAAGTAACTAGGCTGCGCACTTGTAGTCTTTACTTGCTGATATAGCTTCTCCTTTCCAGCTATCGAACCTG
TGTT
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E371701] SGN-U575250 Tomato 200607 Build 2 43 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T184030 [Download][View] Facility Assigned ID: FA0AAD17BA01FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.965 Expected Error Rate: 0.0092 Quality Trim Threshold: 14.5