EST details — SGN-E372169

Search information 
Request: 372169Match: SGN-E372169
Request From: SGN database generated linkMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C179032Clone name: TUS-30-L6
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C179032 is on microarray TOM1 spot ID 1-1-3.4.3.18 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C78603 [cLES-6-D10] Trace: SGN-T98650 EST: SGN-E287198 Direction: 5' Facility: TIGR
Clone: SGN-C179032 [TUS-30-L6] Trace: SGN-T184962 EST: SGN-E372170 Direction: 5' Facility: INRA
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Sequence 
Sequence Id: SGN-E372169Length: 679 bp (914 bp untrimmed)
Status: Current VersionDirection: 3' [See links to 5' reads above]
>SGN-E372169 [] (trimmed) GAAAAGTCCATAATACAATCTGATAAAAGTACAAAAATCCACCGGACTATTTTGCCTAAAAAGAACCTAAGTCATTCCAAATTGCTAGTGTAAGC
AAAATGGTGATGTTATAATACAAACTCTACTATCAACTACATCAAGATCAATTCATCATCATCGTTTATTCATCATGTAAAAAAAACCAGGCACT
GAAAACAACGATGAGCTCCTTTTAATGAATCGTCCTTTCAGCCTAGGCCTTTTTTCTGCGTTCAATTTCCTAACTTCATATCGAATTTTCTTCGA
AAACAATCTGTTCTGTCTTTTCTTTTTGTAACGCGATACCCTTGCTTCTTTTCCTCCATCGCCACATCTTACATGTCCCCCATAATTACCTACAC
TTGTTTCCGAAAAAAAATCGGGCCAGTAGTCATCAGGATTGAAATGGGGTCGGATTCCATTTGTCCATGGAGAAAATTGATTTGGCCAAGCACTA
ATAACCGCCTCATGATTAAAACTGAGAAACAGTCTGTTTTTTTCATCAAATTTTGTACTGCTACCACTGTACTCTTCTGCACTAGCGATAAATTC
TGTTACTGCTGCATCTGCTGCCATTACTTTCTGCTCAACTGTTTCTTCATAATATTCATCAAAGTTCCAATTCAGTGCTTCCCTTTCCATATCCA
ATTCAGGATCCAAA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E372169] SGN-U586088 Tomato 200607 Build 2 29 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T184961 [Download][View] Facility Assigned ID: FA0AAD18DF03FM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 3' sequence read -- flanking 5' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.949 Expected Error Rate: 0.0095 Quality Trim Threshold: 12.5